Comprehensive identification, characterization, and expression analysis of the MORF gene family in Brassica napus

被引:0
|
作者
Xing, Jiani [1 ]
Zhang, Yayi [1 ]
Song, Wenjian [1 ]
Ali, Nadia Ahmed [1 ]
Su, Kexing [1 ]
Sun, Xingxing [1 ]
Sun, Yujia [1 ]
Jiang, Yizhou [1 ]
Zhao, Xiaobo [1 ]
机构
[1] Zhejiang Univ, Inst Nucl Agr Sci, Coll Agr & Biotechnol, Minist Agr & Rural Affairs,Key Lab Nucl Agr Sci,Ke, Hangzhou 310058, Peoples R China
来源
BMC PLANT BIOLOGY | 2024年 / 24卷 / 01期
基金
中国国家自然科学基金;
关键词
MORF gene family; RNA editing; Phylogenetic analysis; Gene expression; Brassica napus; RNA; ARABIDOPSIS; GENOME;
D O I
10.1186/s12870-024-05177-3
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Background RNA editing in chloroplast and mitochondrion transcripts of plants is an important type of post-transcriptional RNA modification in which members of the multiple organellar RNA editing factor gene family (MORF) play a crucial role. However, a systematic identification and characterization of MORF members in Brassica napus is still lacking. Results In this study, a total of 43 MORF genes were identified from the genome of the Brassica napus cultivar "Zhongshuang 11". The Brassica napus MORF (BnMORF) family members were divided into three groups through phylogenetic analysis. BnMORF genes distributed on 14 chromosomes and expanded due to segmental duplication and whole genome duplication repetitions. The majority of BnMORF proteins were predicted to be localized to mitochondria and chloroplasts. The promoter cis-regulatory element analysis, spatial-temporal expression profiling, and co-expression network of BnMORF genes indicated the involvement of BnMORF genes in stress and phytohormone responses, as well as growth and development. Conclusion This study provides a comprehensive analysis of BnMORF genes and lays a foundation for further exploring their physiological functions in Brassica napus.
引用
收藏
页数:16
相关论文
共 50 条
  • [21] Genome-Wide Identification and Evolutionary and Expression Analyses of the Cyclin B Gene Family in Brassica napus
    Li, Mingyue
    Zhang, Minghao
    Meng, Boyu
    Miao, Likai
    Fan, Yonghai
    PLANTS-BASEL, 2024, 13 (12):
  • [22] Genome-Wide Identification and Characterization of the CCT Gene Family in Rapeseed (Brassica napus L.)
    Yu, Liyiqi
    Xia, Jichun
    Jiang, Rujiao
    Wang, Jiajia
    Yuan, Xiaolong
    Dong, Xinchao
    Chen, Zhenjie
    Zhao, Zizheng
    Wu, Boen
    Zhan, Lanlan
    Zhang, Ranfeng
    Tang, Kang
    Li, Jiana
    Xu, Xinfu
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (10)
  • [23] Identification, evolution and expression analyses of whole genome-wide TLP gene family in Brassica napus
    Wang, Tong
    Hu, Jingjing
    Ma, Xiao
    Li, Chunjin
    Yang, Qihang
    Feng, Shuyan
    Li, Miaomiao
    Li, Nan
    Song, Xiaoming
    BMC GENOMICS, 2020, 21 (01)
  • [24] Genome-wide identification, evolution, and expression analysis of HVA22 gene family in Brassica napus L.
    Wang, Ping
    Wang, Lirong
    GENETIC RESOURCES AND CROP EVOLUTION, 2025,
  • [25] Genome-Wide Identification of the TGA Gene Family and Expression Analysis under Drought Stress in Brassica napus L.
    Duan, Yi
    Xu, Zishu
    Liu, Hui
    Wang, Yanhui
    Zou, Xudong
    Zhang, Zhi
    Xu, Ling
    Xu, Mingchao
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (12)
  • [26] Genome-wide identification and characterization of SLEEPER, a transposon-derived gene family and their expression pattern in Brassica napus L.
    Zhu, Ruijia
    An, Shengzhi
    Fu, Jingyan
    Liu, Sha
    Fu, Yu
    Zhang, Ying
    Wang, Rui
    Zhao, Yun
    Wang, Maolin
    BMC PLANT BIOLOGY, 2024, 24 (01):
  • [27] Comprehensive identification and expression analysis of CRY gene family in Gossypium
    Chaochen Huang
    Pengbo Li
    Junfeng Cao
    Zishou Zheng
    Jinquan Huang
    Xiufang Zhang
    Xiaoxia Shangguan
    Lingjian Wang
    Zhiwen Chen
    BMC Genomics, 23
  • [28] Comprehensive identification and expression analysis of CRY gene family in Gossypium
    Huang, Chaochen
    Li, Pengbo
    Cao, Junfeng
    Zheng, Zishou
    Huang, Jinquan
    Zhang, Xiufang
    Shangguan, Xiaoxia
    Wang, Lingjian
    Chen, Zhiwen
    BMC GENOMICS, 2022, 23 (01)
  • [29] Comprehensive selection of reference genes for quantitative gene expression analysis during seed development in Brassica napus
    Ronei Dorneles Machado
    Ana Paula Christoff
    Guilherme Loss-Morais
    Márcia Margis-Pinheiro
    Rogério Margis
    Ana Paula Körbes
    Plant Cell Reports, 2015, 34 : 1139 - 1149
  • [30] Comprehensive Genomic Survey, Characterization and Expression Analysis of the HECT Gene Family in Brassica rapa L. and Brassica oleracea L.
    Alam, Intikhab
    Cui, Dong-Li
    Batool, Khadija
    Yang, Yan-Qing
    Lu, Yun-Hai
    GENES, 2019, 10 (05)