Comparison of left- and right-sided colorectal cancer to explore prognostic signatures related to pyroptosis

被引：3

作者：

Luo, Shibi ^{[1
]}

Cai, Shenggang ^{[1
]}

Zhao, Rong ^{[1
]}

Xu, Lin ^{[1
]}

Zhang, Xiaolong ^{[1
]}

Gong, Xiaolei ^{[1
]}

Zhang, Zhiping ^{[1
,2
]}

Liu, Qiyu ^{[1
]}

机构：

[1] Kunming Med Univ, Ganmei Affiliated Hosp, Peoples Hosp Kunming 1, Dept Gen Surg, 504 Qingnian Rd, Kunming 650034, Yunnan, Peoples R China

[2] Yunnan Univ, Affiliated Hosp, Dept Gen Surg, Kunming 650031, Yunnan, Peoples R China

来源：

HELIYON | 2024年 / 10卷 / 07期

关键词：

Left-sided colorectal cancer; Right-sided colorectal cancer; Pyroptosis; Prognosis; Predictive model; Experimental validation; FEATURES; GENES; NLRP7;

D O I：

10.1016/j.heliyon.2024.e28091

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Background: Colorectal cancer (CRC) is one of the most common malignancies, and pyroptosis exerts an immunoregulatory role in CRC. Although the location of the primary tumor is a prognostic factor for patients with CRC, the mechanisms of pyroptosis in left- and right-sided CRC remain unclear. Methods: Expression and clinical data were collected from The Cancer Genome Atlas and Gene Expression Omnibus databases. Differences in clinical characteristics, immune cell infiltration, and somatic mutations between left- and right-sided CRC were then compared. After screening for differentially expressed genes, Pearson correlation analysis was performed to select pyroptosisrelated genes, followed by a gene set enrichment analysis. Univariate and multivariate Cox regression analyses were used to construct and validate the prognostic model and nomogram for predicting prognosis. Collected left- and right-sided CRC samples were subjected to reverse transcription-quantitative polymerase chain reaction (RT-qPCR) to validate the expression of key pyroptosis-related genes. Results: Left- and right-sided CRC exhibited significant differences in clinical features and immune cell infiltration. Five prognostic signatures were identified from among 134 pyroptosis-related differentially expressed genes to construct a risk score-based prognostic model, and adverse outcomes for high-risk patients were further verified using an external cohort. A nomogram was also generated based on three independent prognostic factors to predict survival probabilities, while calibration curves confirmed the consistency between the predicted and actual survival. Experiment data confirmed the significant differential expression of five genes between left- and right-sided CRC. Conclusion: The five identified pyroptosis-related gene signatures may be potential biomarkers for predicting prognosis in left- and right-sided CRC and may help improve the clinical outcomes of patients with CRC.

引用

页数：15