Advancing chromosomal-scale, haplotype-resolved genome assembly: beading with Hi-C data

[1] Chen H(2020)Allele-aware chromosome-level genome assembly and efficient transgene-free genome editing for the autotetraploid cultivated alfalfa Nat Commun 11 2494-175

[2] Zeng Y(2021)Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm Nat Methods 18 170-312

[3] Yang Y(2021)Chromosome-scale, haplotype-resolved assembly of human genomes Nat Biotechnol 39 309-1041

[4] Huang L(2022)De novo phasing resolves haplotype sequences in complex plant genomes Plant Biotechnol J 20 1031-1182

[5] Tang B(2018)De novo assembly of haplotype-resolved genomes with trio binning Nat Biotechnol 36 1174-670

[6] Zhang H(2024)Genome assembly in the telomere-to-telomere era Nat Rev Genet 25 658-1972

[7] Hao F(2021)Toward haplotype studies in polyploid plants to assist breeding Mol Plant 14 1969-1573

[8] Liu W(2018)Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L Nat Genet 50 1565-845

[9] Li Y(2019)Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data Nat Plants 5 833-1259

[10] Liu Y(2021)Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Nat Genet 53 1250-undefined

[1] Chen H(2020)Allele-aware chromosome-level genome assembly and efficient transgene-free genome editing for the autotetraploid cultivated alfalfa Nat Commun 11 2494-175

[2] Zeng Y(2021)Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm Nat Methods 18 170-312

[3] Yang Y(2021)Chromosome-scale, haplotype-resolved assembly of human genomes Nat Biotechnol 39 309-1041

[4] Huang L(2022)De novo phasing resolves haplotype sequences in complex plant genomes Plant Biotechnol J 20 1031-1182

[5] Tang B(2018)De novo assembly of haplotype-resolved genomes with trio binning Nat Biotechnol 36 1174-670

[6] Zhang H(2024)Genome assembly in the telomere-to-telomere era Nat Rev Genet 25 658-1972

[7] Hao F(2021)Toward haplotype studies in polyploid plants to assist breeding Mol Plant 14 1969-1573

[8] Liu W(2018)Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L Nat Genet 50 1565-845

[9] Li Y(2019)Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data Nat Plants 5 833-1259

[10] Liu Y(2021)Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Nat Genet 53 1250-undefined