Current Knowledge of Base Editing and Prime Editing

被引:4
作者
Averina, O. A. [1 ,2 ,3 ]
Kuznetsova, S. A. [1 ]
Permyakov, O. A. [1 ,3 ]
Sergiev, P. V. [1 ,2 ,3 ]
机构
[1] Moscow State Univ, Inst Funct Genom, Moscow 119991, Russia
[2] Moscow State Univ, Belozersky Inst Physico Chem Biol, Moscow 119991, Russia
[3] Moscow State Univ, Chem Fac, Moscow 119991, Russia
基金
俄罗斯科学基金会;
关键词
CRISPR/Cas technology; base editing; nucleoside deaminases; prime editing; reverse transcriptase; repair systems; GENOMIC DNA; OFF-TARGET; CRISPR-CAS9; EDITORS;
D O I
10.1134/S0026893324700195
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Modern genetic engineering technologies, such as base editing and prime editing (PE), have proven to provide the efficient and reliable genome editing tools that obviate the need for donor templates and double-strand breaks (DSBs) introduced in DNA. Relatively new, they quickly gained recognition for their accuracy, simplicity, and multiplexing capabilities. The review summarizes the new literature on the technologies and considers their architecture, methods to create editors, specificity, efficiency, and versatility. Advantages and disadvantages of the editors are discussed along with their prospective use in basic and applied research. The review may be useful for planning genome editing studies and analyzing their results to solve various problems of fundamental biology, biotechnology, medicine, and agriculture.
引用
收藏
页码:571 / 587
页数:17
相关论文
共 117 条
[61]   Base editing with a Cpf1-cytidine deaminase fusion [J].
Li, Xiaosa ;
Wang, Ying ;
Liu, Yajing ;
Yang, Bei ;
Wang, Xiao ;
Wei, Jia ;
Lu, Zongyang ;
Zhang, Yuxi ;
Wu, Jing ;
Huang, Xingxu ;
Yang, Li ;
Chen, Jia .
NATURE BIOTECHNOLOGY, 2018, 36 (04) :324-+
[62]   Genome-wide profiling of adenine base editor specificity by EndoV-seq [J].
Liang, Puping ;
Xie, Xiaowei ;
Zhi, Shengyao ;
Sun, Hongwei ;
Zhang, Xiya ;
Chen, Yu ;
Chen, Yuxi ;
Xiong, Yuanyan ;
Ma, Wenbin ;
Liu, Dan ;
Huang, Junjiu ;
Zhou Songyang .
NATURE COMMUNICATIONS, 2019, 10 (1)
[63]   AGBE: a dual deaminase-mediated base editor by fusing CGBE with ABE for creating a saturated mutant population with multiple editing patterns [J].
Liang, Yanhui ;
Xie, Jingke ;
Zhang, Quanjun ;
Wang, Xiaomin ;
Gou, Shixue ;
Lin, Lihui ;
Chen, Tao ;
Ge, Weikai ;
Zhuang, Zhenpeng ;
Lian, Meng ;
Chen, Fangbing ;
Li, Nan ;
Ouyang, Zhen ;
Lai, Chengdan ;
Liu, Xiaoyi ;
Li, Lei ;
Ye, Yinghua ;
Wu, Han ;
Wang, Kepin ;
Lai, Liangxue .
NUCLEIC ACIDS RESEARCH, 2022, 50 (09) :5384-5399
[64]   Prime genome editing in rice and wheat [J].
Lin, Qiupeng ;
Zong, Yuan ;
Xue, Chenxiao ;
Wang, Shengxing ;
Jin, Shuai ;
Zhu, Zixu ;
Wang, Yanpeng ;
Anzalone, Andrew V. ;
Raguram, Aditya ;
Doman, Jordan L. ;
Liu, David R. ;
Gao, Caixia .
NATURE BIOTECHNOLOGY, 2020, 38 (05) :582-+
[65]   A Cas-embedding strategy for minimizing off-target effects of DNA base editors [J].
Liu, Yajing ;
Zhou, Changyang ;
Huang, Shisheng ;
Dang, Lu ;
Wei, Yu ;
He, Jun ;
Zhou, Yingsi ;
Mao, Shaoshuai ;
Tao, Wanyu ;
Zhang, Yu ;
Yang, Hui ;
Huang, Xingxu ;
Chi, Tian .
NATURE COMMUNICATIONS, 2020, 11 (01)
[66]   Enhancing prime editing by Csy4-mediated processing of pegRNA [J].
Liu, Yao ;
Yang, Guang ;
Huang, Shuhong ;
Li, Xiangyang ;
Wang, Xin ;
Li, Guanglei ;
Chi, Tian ;
Chen, Yulin ;
Huang, Xingxu ;
Wang, Xiaolong .
CELL RESEARCH, 2021, 31 (10) :1134-1136
[67]   Precise base editing with CC context-specificity using engineered human APOBEC3G-nCas9 fusions [J].
Liu, Zhiquan ;
Chen, Siyu ;
Shan, Huanhuan ;
Jia, Yingqi ;
Chen, Mao ;
Song, Yuning ;
Lai, Liangxue ;
Li, Zhanjun .
BMC BIOLOGY, 2020, 18 (01)
[68]   Efficient base editing with high precision in rabbits using YFE-BE4max [J].
Liu, Zhiquan ;
Chen, Siyu ;
Shan, Huanhuan ;
Jia, Yingqi ;
Chen, Mao ;
Song, Yuning ;
Lai, Liangxue ;
Li, Zhanjun .
CELL DEATH & DISEASE, 2020, 11 (01)
[69]   Efficient base editing with expanded targeting scope using an engineered Spy-mac Cas9 variant [J].
Liu, Zhiquan ;
Shan, Huanhuan ;
Chen, Siyu ;
Chen, Mao ;
Song, Yuning ;
Lai, Liangxue ;
Li, Zhanjun .
CELL DISCOVERY, 2019, 5 (1)
[70]   Improved base editor for efficient editing in GC contexts in rabbits with an optimized AID-Cas9 fusion [J].
Liu, Zhiquan ;
Shan, Huanhuan ;
Chen, Siyu ;
Chen, Mao ;
Zhang, Quanjun ;
Lai, Liangxue ;
Li, Zhanjun .
FASEB JOURNAL, 2019, 33 (08) :9210-9219