Permittivity tensor imaging: modular label-free imaging of 3D dry mass and 3D orientation at high resolution

被引:8
作者
Yeh, Li-Hao [1 ,6 ]
Ivanov, Ivan E. [1 ]
Chandler, Talon [1 ]
Byrum, Janie R. [1 ,7 ]
Chhun, Bryant B. [1 ,8 ]
Guo, Syuan-Ming [1 ,9 ]
Foltz, Cameron [1 ,10 ]
Hashemi, Ezzat [2 ]
Perez-Bermejo, Juan A. [3 ,11 ]
Wang, Huijun [4 ]
Yu, Yanhao [4 ]
Kazansky, Peter G. [4 ]
Conklin, Bruce R. [3 ,5 ]
Han, May H. [2 ]
Mehta, Shalin B. [1 ]
机构
[1] Chan Zuckerberg Biohub, San Francisco, CA 94158 USA
[2] Stanford Univ, Palo Alto, CA USA
[3] Gladstone Inst, San Francisco, CA USA
[4] Univ Southampton, Southampton, England
[5] Univ Calif San Francisco, San Francisco, CA USA
[6] ASML, San Jose, CA USA
[7] Calif Stem Cell Agcy, South San Francisco, CA USA
[8] Eikon Therapeut, Hayward, CA USA
[9] Insitro, South San Francisco, CA USA
[10] Quantinuum, Broomfield, CO USA
[11] Genentech Inc, South San Francisco, CA USA
基金
欧洲研究理事会; 美国国家卫生研究院;
关键词
BIREFRINGENCE; DIFFUSION; POLARIZATION; FEMTOSECOND; MICROSCOPE; HISTOLOGY; DYNAMICS; MOUSE; ARRAY;
D O I
10.1038/s41592-024-02291-w
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The dry mass and the orientation of biomolecules can be imaged without a label by measuring their permittivity tensor (PT), which describes how biomolecules affect the phase and polarization of light. Three-dimensional (3D) imaging of PT has been challenging. We present a label-free computational microscopy technique, PT imaging (PTI), for the 3D measurement of PT. PTI encodes the invisible PT into images using oblique illumination, polarization-sensitive detection and volumetric sampling. PT is decoded from the data with a vectorial imaging model and a multi-channel inverse algorithm, assuming uniaxial symmetry in each voxel. We demonstrate high-resolution imaging of PT of isotropic beads, anisotropic glass targets, mouse brain tissue, infected cells and histology slides. PTI outperforms previous label-free imaging techniques such as vector tomography, ptychography and light-field imaging in resolving the 3D orientation and symmetry of organelles, cells and tissue. We provide open-source software and modular hardware to enable the adoption of the method. Permittivity tensor imaging is a label-free computational microscopy approach that enables the three-dimensional measurement of molecular permittivity tensors, revealing information about a biomolecule's dry mass and orientation in cells and tissues.
引用
收藏
页码:1257 / 1274
页数:35
相关论文
共 78 条
[1]   Diffusion tensor imaging of the brain [J].
Alexander, Andrew L. ;
Lee, Jee Eun ;
Lazar, Mariana ;
Field, Aaron S. .
NEUROTHERAPEUTICS, 2007, 4 (03) :316-329
[2]   POLARIZED LIGHT OBSERVATIONS ON STRIATED MUSCLE CONTRACTION IN A MITE [J].
ARONSON, JF .
JOURNAL OF CELL BIOLOGY, 1967, 32 (01) :169-+
[3]  
Axer Markus, 2011, Front Neuroinform, V5, P34, DOI 10.3389/fninf.2011.00034
[4]   REFRACTIVE INDEX OF CONCENTRATED PROTEIN SOLUTIONS [J].
BARER, R ;
TKACZYK, S .
NATURE, 1954, 173 (4409) :821-822
[5]   Extending Quantitative Phase Imaging to Polarization-Sensitive Materials [J].
Baroni, Arthur ;
Chamard, Virginie ;
Ferrand, Patrick .
PHYSICAL REVIEW APPLIED, 2020, 13 (05)
[6]  
Born M., 2013, Principles of Optics: Electromagnetic Theory of Propagation, Interference, and Diffraction of Light
[7]  
Bredfeldt Jeremy S, 2014, J Pathol Inform, V5, P28, DOI 10.4103/2153-3539.139707
[8]   Form birefringence and negative index change created by femtosecond direct writing in transparent materials [J].
Bricchi, E ;
Klappauf, BG ;
Kazansky, PG .
OPTICS LETTERS, 2004, 29 (01) :119-121
[9]   Physical basis of spindle self-organization [J].
Brugues, Jan ;
Needleman, Daniel .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (52) :18496-18500
[10]  
Chandler Talon, 2024, bioRxiv, DOI 10.1101/2024.03.09.584243