Lipophilicity and Biological Activity Study of Several Caspofungin Antifungal Drugs Using QSAR and Monte Carlo Methods

被引:0
作者
Nikkar, Maria [1 ]
Kordabadi, Robabeh Sayyadi [1 ]
Alizadeh, Omid [1 ]
Ghasemi, Ghasem [1 ]
机构
[1] Islamic Azad Univ, Dept Chem & Chem Engn, Rasht Branch, Rasht, Iran
来源
IRANIAN JOURNAL OF CHEMISTRY & CHEMICAL ENGINEERING-INTERNATIONAL ENGLISH EDITION | 2022年 / 41卷 / 12期
关键词
Caspofungin drugs; QSAR; Genetic Algorithm; Monte Carlo method; IMPERIALIST COMPETITIVE ALGORITHM; QUANTITATIVE STRUCTURE; ZINC; INHIBITORS; PREDICTION; ACID; DFT;
D O I
暂无
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
QSAR investigations of Caspofungin derivatives were conducted using Multiple Linear Regression (MLR), Artificial Neural Network (ANN), and Monte Carlo Methods. The obtained results were compared and GA -ANN and ICA-MLR combinations showed the best performance according to their correlation coefficient (R2) and Root Mean Sum Square Errors (RMSE). The most important physicochemical and structural descriptors were presented and discussed. Monte Carlo method revealed that the presence of a double bond with branching, a six -member cycle, the absence of halogens, the presence of sp(2) carbon connected to branching, the presence of Nitrogen and Oxygen atoms, absence of Sulphur and Phosphorus are the most important molecular features. The best Caspofungin derivative was exposed to reaction with Cu, Zn, Fe using B3lyp/6-311g/lanl2dz to investigate the stability of the formed complexes, from which the Zn complex was perceived to be the most stable one. It was concluded that QSAR study and the Monte Carlo method can lead to a more comprehensive understanding of the relation between physicochemical, structural, or theoretical molecular descriptors of drugs to their biological activities and Lipophilicity.
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收藏
页码:4132 / 4150
页数:19
相关论文
共 45 条
  • [1] Ab initio and QSAR study of several etoposides as anticancer drugs: Solvent effect
    Abadi, R. Sayyadi Kord
    Alizadehdakhel, A.
    Shiraz, S. Dorani
    [J]. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 11 (02) : 307 - 317
  • [2] A DFT and QSAR Study of Several Sulfonamide Derivatives in Gas and Solvent
    Abadi, Robabeh Sayyadi Kord
    Alizadehdakhel, Asghar
    Paskiabei, Soghra Tajadodi
    [J]. JOURNAL OF THE KOREAN CHEMICAL SOCIETY-DAEHAN HWAHAK HOE JEE, 2016, 60 (04): : 225 - 234
  • [3] A novel combinatorial merge-split approach for automatic clustering using imperialist competitive algorithm
    Aliniya, Zahra
    Mirroshandel, Seyed Abolghasem
    [J]. EXPERT SYSTEMS WITH APPLICATIONS, 2019, 117 : 243 - 266
  • [4] Zinc(II) complexes with aromatic nitrogen-containing heterocycles as antifungal agents: Synergistic activity with clinically used drug nystatin
    Andrejevic, Tina P.
    Warzajtis, Beata
    Glisic, Biljana D.
    Vojnovic, Sandra
    Mojicevic, Marija
    Stevanovic, Nevena L. J.
    Nikodinovic-Runic, Jasmina
    Rychlewska, Urszula
    Djuran, Milos, I
    [J]. JOURNAL OF INORGANIC BIOCHEMISTRY, 2020, 208
  • [5] Atashpaz-Gargari E, 2007, IEEE C EVOL COMPUTAT, P4661, DOI 10.1109/cec.2007.4425083
  • [6] SIMULATED ANNEALING
    BERTSIMAS, D
    TSITSIKLIS, J
    [J]. STATISTICAL SCIENCE, 1993, 8 (01) : 10 - 15
  • [7] A comparative study of optimal hybrid methods for wind power prediction in wind farm of Alberta, Canada
    Bigdeli, Nooshin
    Afshar, Karim
    Gazafroudi, Amin Shokri
    Ramandi, Mostafa Yousefi
    [J]. RENEWABLE & SUSTAINABLE ENERGY REVIEWS, 2013, 27 : 20 - 29
  • [9] Antifungal susceptibility of Candida species isolated from patients with candidemia in southern Taiwan, 2007-2012: impact of new antifungal breakpoints
    Chen, Yi-Chun
    Kuo, Shu-Fang
    Chen, Fang-Ju
    Lee, Chen-Hsiang
    [J]. MYCOSES, 2017, 60 (02) : 89 - 95
  • [10] ESCMID* guideline for the diagnosis and management of Candida diseases 2012: non-neutropenic adult patients
    Cornely, O. A.
    Bassetti, M.
    Calandra, T.
    Garbino, J.
    Kullberg, B. J.
    Lortholary, O.
    Meersseman, W.
    Akova, M.
    Arendrup, M. C.
    Arikan-Akdagli, S.
    Bille, J.
    Castagnola, E.
    Cuenca-Estrella, M.
    Donnelly, J. P.
    Groll, A. H.
    Herbrecht, R.
    Hope, W. W.
    Jensen, H. E.
    Lass-Floerl, C.
    Petrikkos, G.
    Richardson, M. D.
    Roilides, E.
    Verweij, P. E.
    Viscoli, C.
    Ullmann, A. J.
    [J]. CLINICAL MICROBIOLOGY AND INFECTION, 2012, 18 : 19 - 37