Micromonosporaceae biosynthetic gene cluster diversity highlights the need for broad- spectrum investigations

被引:2
作者
Alas, Imraan [1 ]
Braun, Doug R. [1 ]
Ericksen, Spencer S. [2 ]
Salamzade, Rauf [3 ,4 ]
Kalan, Lindsay [3 ,4 ]
Rajski, Scott R. [1 ]
Bugni, Tim S. [1 ,2 ,5 ]
机构
[1] Univ Wisconsin Madison, Pharmaceut Sci Div, Madison, WI 53706 USA
[2] UW Carbone Canc Ctr, Small Mol Screening Facil, Madison, WI 53792 USA
[3] Univ Wisconsin Madison, Dept Med Microbiol & Immunol, Madison, WI USA
[4] McMaster Univ, Hlth Sci Ctr, Dept Biochem & Biomed Sci, Hamilton, ON, Canada
[5] Univ Wisconsin Madison, Lachman Inst Pharmaceut Dev, Madison, WI 53706 USA
关键词
biosynthetic gene cluster; drug discovery; genomics; marine-; derived; natural products; SECONDARY METABOLITES; NATURAL-PRODUCT; MARINE; DISCOVERY; BACTERIAL;
D O I
10.1099/mgen.0.001167
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Investigations of the bacterial family Micromonosporaceae have enabled the development of secondary metabolites critical to human health. Historical investigation of bacterial families for natural product discovery has focused on terrestrial strains, where time- consuming isolation processes often lead to the rediscovery of known compounds. To investigate the secondary metabolite potential of marine- derived Micromonosporaceae, 38 strains were sequenced, assembled and analysed using antiSMASH and BiG- SLiCE. BiG- SLiCE contains a near- comprehensive dataset of approximately 1.2 million publicly available biosynthetic gene clusters from primarily terrestrial strains. Our marine- derived Micromonosporaceae were directly compared to BiG- SLiCE's preprocessed database using BiG- SLiCE's query mode; genetic diversity within our strains was uncovered using BiG- SCAPE and metric multidimensional scaling analysis. Our analysis of marine- derived Micromonosporaceae emphasizes the clear need for broader genomic investigations of marine strains to fully realize their potential as sources of new natural products.
引用
收藏
页数:15
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