Hydrogen bonds of a water molecule in the second coordination sphere of amino acid metal complexes: influence of amino acid types on different complex geometries

被引:1
作者
Zrilic, S. S. [1 ]
Zivkovic, J. M. [1 ]
Zaric, S. D. [2 ]
机构
[1] Fac Chem, Innovat Ctr, Belgrade, Serbia
[2] Univ Belgrade, Fac Chem, Belgrade, Serbia
关键词
Non-covalent interactions; hydrogen bonds; amino acids; metal complexes; density functional theory (DFT); ION; KINETICS;
D O I
10.1080/00958972.2024.2326898
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
Quantum chemical calculations at the M06L-GD3/def2-TZVPP level were done to investigate hydrogen bonds between amino acid metal complexes and a free water molecule. Octahedral nickel(II) and square planar palladium(II) complexes of glycine, cysteine, phenylalanine, and serine with different charges of metal complexes (+1, 0, and -1) were investigated. The following hydrogen bonds were considered: NH/O (amino acid is a H-donor), O1/HO (coordinated O1 oxygen from amino acid is a H-acceptor), and O2/HO (non-coordinated O2 oxygen from amino acid is a H-acceptor). Amino acid type has a small influence on interaction energies, both for octahedral nickel(II) and square planar palladium(II) complexes. The influence is the largest for NH/O and the smallest for O2/HO hydrogen bonds. For NH/O interaction, palladium(II) complexes showed stronger hydrogen bonds than nickel(II), up to -11.8 kcal mol(-1) for singly positively charged complexes. Nickel(II) complexes demonstrated higher O1/HO hydrogen bond strength than palladium(II) with interaction energies up to -8.9 kcal mol(-1) for singly negative complexes. With up to -9.0 kcal mol(-1) interaction energy for singly negative complexes, O2/HO interactions were also stronger for nickel(II) complexes than palladium(II). [GRAPHICS]
引用
收藏
页码:825 / 842
页数:18
相关论文
共 37 条
  • [1] Structural studies of bis(histidinato)nickel(II): Combined experimental and computational studies
    Abbasi, Alireza
    Safarkoopayeh, Barzin
    Khosravi, Nikoo
    Shayesteh, Alireza
    [J]. COMPTES RENDUS CHIMIE, 2017, 20 (05) : 467 - 474
  • [2] Amino Acids and Peptides as Versatile Ligands in the Synthesis of Antiproliferative Gold Complexes
    Andrejevic, Tina P.
    Glisic, Biljana D.
    Djuran, Milos, I
    [J]. CHEMISTRY-SWITZERLAND, 2020, 2 (02): : 203 - 218
  • [3] Hydrogen Bonding between Metal-Ion Complexes and Noncoordinated Water: Electrostatic Potentials and Interaction Energies
    Andric, Jelena M.
    Misini-Ignjatovic, Majda Z.
    Murray, Jane S.
    Politzer, Peter
    Zaric, Snezana D.
    [J]. CHEMPHYSCHEM, 2016, 17 (13) : 2035 - 2042
  • [4] The influence of water molecule coordination to a metal ion on water hydrogen bonds
    Andric, Jelena M.
    Janjic, Goran V.
    Ninkovic, Dragan B.
    Zaric, Snezana D.
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2012, 14 (31) : 10896 - 10898
  • [5] Metal Complexes of Biologically Important Ligands, CLXXII [1]. Metal Ions and Metal Complexes as Protective Groups of Amino Acids and Peptides - Reactions at Coordinated Amino Acids
    Beck, Wolfgang
    [J]. ZEITSCHRIFT FUR NATURFORSCHUNG SECTION B-A JOURNAL OF CHEMICAL SCIENCES, 2009, 64 (11-12): : 1221 - 1245
  • [6] Kinetic Studies on the Reactions of Different Bifunctional Platinum(II) Complexes with Selected Nucleophiles
    Bogojeski, Jovana
    Bugarcic, Zivadin D.
    Puchta, Ralph
    van Eldik, Rudi
    [J]. EUROPEAN JOURNAL OF INORGANIC CHEMISTRY, 2010, (34) : 5439 - 5445
  • [7] CALCULATION OF SMALL MOLECULAR INTERACTIONS BY DIFFERENCES OF SEPARATE TOTAL ENERGIES - SOME PROCEDURES WITH REDUCED ERRORS
    BOYS, SF
    BERNARDI, F
    [J]. MOLECULAR PHYSICS, 1970, 19 (04) : 553 - &
  • [8] Kinetics, mechanism and equilibrium studies on the substitution reactions of Pd(II) in reference to Pt(II) complexes with bio-molecules
    Bugarcic, Zivadin D.
    Bogojeski, Jovana
    van Eldik, Rudi
    [J]. COORDINATION CHEMISTRY REVIEWS, 2015, 292 : 91 - 106
  • [9] Cheeseman G., 2009, REVISION D01
  • [10] Cheng Q., 1987, J AM CHEM SOC, V145, P5888