Identification of Canadian barley varieties by high-throughput SNP genotyping

被引:0
|
作者
Leea, Sung -Jong [1 ]
Eckhardta, Maria [1 ]
Dusabenyagasania, Mathieu [1 ]
Izydorczyka, Marta [1 ,2 ]
Demekea, Tigst [1 ]
Perrya, Daniel [1 ]
Walkowiak, Sean [1 ,2 ]
机构
[1] Canadian Grain Commiss, Winnipeg, MB, Canada
[2] Univ Manitoba, Winnipeg, MB, Canada
关键词
DNA; barley; variety; genotyping; Canada; HORDEUM-VULGARE; MAP; QUALITY; MARKERS; GENES;
D O I
10.1139/CJPS-2023-0187
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Barley is a major grain crop in Canada and is used for generating malt, in addition to being used as human food and animal feed. Differentiating barley varieties is important for malt quality assurance and grain handling. Here, we present a DNAbased testing method for the identification of Canadian barley varieties. The method uses 24 custom TaqMan genotyping assays, which are analyzed using the high -throughput SmartChip system (Takara Bio Inc.). Using this method, we are able to distinguish 124 barley varieties commonly grown in Canada.
引用
收藏
页码:388 / 393
页数:6
相关论文
共 50 条
  • [1] Evaluation of two high-throughput genotyping systems for rapid identification of Canadian wheat varieties
    Lee, Sung-Jong
    Demeke, Tigst
    Dusabenyagasani, Mathieu
    Saydak, Danny
    Perry, Daniel
    Walkowiak, Sean
    CANADIAN JOURNAL OF PLANT SCIENCE, 2023, 103 (04) : 422 - 425
  • [2] High-throughput genotyping in citrus accessions using an SNP genotyping array
    Fujii, Hiroshi
    Shimada, Takehiko
    Nonaka, Keisuke
    Kita, Masayuki
    Kuniga, Takeshi
    Endo, Tomoko
    Ikoma, Yoshinori
    Omura, Mitsuo
    TREE GENETICS & GENOMES, 2013, 9 (01) : 145 - 153
  • [3] An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines
    Sato, Kazuhiro
    Takeda, Kazuyoshi
    THEORETICAL AND APPLIED GENETICS, 2009, 119 (04) : 613 - 619
  • [4] High-throughput SNP genotyping on universal bead arrays
    Shen, R
    Fan, JB
    Campbell, D
    Chang, WH
    Chen, J
    Doucet, D
    Yeakley, J
    Bibikova, M
    Garcia, EW
    McBride, C
    Steemers, F
    Garcia, F
    Kermani, BG
    Gunderson, K
    Oliphant, A
    MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS, 2005, 573 (1-2) : 70 - 82
  • [5] High-throughput genotyping in citrus accessions using an SNP genotyping array
    Hiroshi Fujii
    Takehiko Shimada
    Keisuke Nonaka
    Masayuki Kita
    Takeshi Kuniga
    Tomoko Endo
    Yoshinori Ikoma
    Mitsuo Omura
    Tree Genetics & Genomes, 2013, 9 : 145 - 153
  • [6] A high-throughput apple SNP genotyping platform using the GoldenGate™ assay
    Khan, M. Awais
    Han, Yuepeng
    Zhao, Youfu Frank
    Korban, Schuyler S.
    GENE, 2012, 494 (02) : 196 - 201
  • [7] High-Throughput DNA Extraction and Optimization of PCR Efficiency for Barley SSRs Genotyping
    Naeem, Rehan
    Mirza, Bushra
    ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING, 2018, 43 (01) : 143 - 154
  • [8] High-Throughput DNA Extraction and Optimization of PCR Efficiency for Barley SSRs Genotyping
    Rehan Naeem
    Bushra Mirza
    Arabian Journal for Science and Engineering, 2018, 43 : 143 - 154
  • [9] High-throughput SNP-genotyping analysis of the relationships among Ponto-Caspian sturgeon species
    Rastorguev, Sergey M.
    Nedoluzhko, Artem V.
    Mazur, Alexander M.
    Gruzdeva, Natalia M.
    Volkov, Alexander A.
    Barmintseva, Anna E.
    Mugue, Nikolai S.
    Prokhortchouk, Egor B.
    ECOLOGY AND EVOLUTION, 2013, 3 (08): : 2612 - 2618
  • [10] Reliability of high-throughput genotyping of whole genome amplified DNA in SNP genotyping studies
    Berthier-Schaad, Yvette
    Kao, Wen Hong Linda
    Coresh, Josef
    Zhang, Lin
    Ingersoll, Roxann G.
    Stephens, Robert
    Smith, Michael W.
    ELECTROPHORESIS, 2007, 28 (16) : 2812 - 2817