Unraveling the influence of nitration on pore formation time in electroporation of cell membranes: a molecular dynamics simulation approach

被引:3
作者
Niyozaliev, Mukhammadali [1 ,2 ]
Matyakubov, Jakhongir [3 ]
Abduvokhidov, Davronjon [3 ,4 ]
Attri, Pankaj [5 ,6 ,7 ]
Chen, Zhitong [8 ,9 ]
Razzokov, Jamoliddin [10 ,11 ,12 ]
机构
[1] Natl Univ Uzbekistan, Dept Phys, Univ 4, Tashkent 100174, Uzbekistan
[2] Tashkent Int Univ Educ, Dept Informat Technol, Imom Bukhoriy 6, Tashkent 100207, Uzbekistan
[3] Acad Sci, Inst Mat Sci, Chingiz Aytmatov 2b, Tashkent 100084, Uzbekistan
[4] Natl Res Univ TIIAME, Inst Fundamental & Appl Res, Kori Niyoziy39, Tashkent 100000, Uzbekistan
[5] Kyushu Univ, Ctr Plasma Nanointerface Engn, Fukuoka, Fukuoka 819039, Japan
[6] Kyushu Univ, Grad Sch Informat Sci & Elect Engn, Fukuoka 8190395, Japan
[7] Kyushu Univ, Fac Informat Sci & Elect Engn, Fukuoka 8190395, Japan
[8] Chinese Acad Sci, Inst Biomed & Hlth Engn, Shenzhen Inst Adv Technol, Shenzhen 518055, Peoples R China
[9] Natl Innovat Ctr Adv Med Devices, Ctr Adv Therapy, Shenzhen, Peoples R China
[10] New Uzbekistan Univ, R&D Ctr, Movarounnahr St 1, Tashkent 100007, Uzbekistan
[11] Ctr Adv Technol, Lab Expt Biophys, Univ 7, Tashkent 100174, Uzbekistan
[12] Tashkent State Tech Univ, Dept Biomed Engn, Tashkent 100095, Uzbekistan
关键词
molecular dynamics simulation; cell membrane; nitration; electroporation; plasma medicine; CONSTANT ELECTRIC-FIELD; LIPID-BILAYERS; MECHANISM; PEROXYNITRITE; PERMEATION; TRANSPORT; KINETICS; ROLES; SKIN;
D O I
10.1088/1361-6463/ad3bc8
中图分类号
O59 [应用物理学];
学科分类号
摘要
Electroporation, the transient permeabilization of cell membranes induced by electric fields, is an essential technique in biomedicine, facilitating gene delivery, drug transport, and cancer therapy. Despite its wide application, the influence of nitration, a biological modification involving the addition of nitro groups to phospholipids, on electroporation dynamics remains understudied. Here, we employ molecular dynamics simulations to investigate the impact of nitration on pore formation during electroporation. By systematically varying nitration levels and electric field strengths, we explore the nuanced interplay between nitration and electroporation kinetics. Our simulations reveal that increasing nitration levels significantly accelerate pore formation, with notable reductions in pore formation times observed at higher nitration percentages and stronger electric fields. This phenomenon underscores the modulatory role of nitration in altering the dynamics of electroporation. Additionally, our study sheds light on the intricate mechanisms underlying this process, providing essential insights for optimizing electroporation protocols in gene therapy, drug delivery, plasma cancer treatment and related biomedical applications. These findings illuminate the synergistic relationship between nitration and electroporation, paving the way for future advancements in this vital field.
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页数:9
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  • [1] Unraveling the Transport Properties of RONS across Nitro-Oxidized Membranes
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    Yusupov, Maksudbek
    Shahzad, Aamir
    Attri, Pankaj
    Shiratani, Masaharu
    Oliveira, Maria C.
    Razzokov, Jamoliddin
    [J]. BIOMOLECULES, 2023, 13 (07)
  • [2] The Good and the Bad of Cell Membrane Electroporation
    Balantic, Katja
    Miklavcic, Damijan
    Krizaj, Igor
    Kramar, Peter
    [J]. ACTA CHIMICA SLOVENICA, 2021, 68 (04) : 753 - 764
  • [3] Effects of Temperature Control Algorithms on Transport Properties and Kinetics in Molecular Dynamics Simulations
    Basconi, Joseph E.
    Shirts, Michael R.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2013, 9 (07) : 2887 - 2899
  • [4] Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations
    Boeckmann, Rainer A.
    de Groot, Bert L.
    Kakorin, Sergej
    Neumann, Eberhard
    Grubmueller, Helmut
    [J]. BIOPHYSICAL JOURNAL, 2008, 95 (04) : 1837 - 1850
  • [5] Plasma for cancer treatment: How can RONS penetrate through the cell membrane? Answers from computer modeling
    Bogaerts, Annemie
    Yusupov, Maksudbek
    Razzokov, Jamoliddin
    Van der Paal, Jonas
    [J]. FRONTIERS OF CHEMICAL SCIENCE AND ENGINEERING, 2019, 13 (02) : 253 - 263
  • [6] Comparing Simulations of Lipid Bilayers to Scattering Data: The GROMOS 43A1-S3 Force Field
    Braun, Anthony R.
    Sachs, Jonathan N.
    Nagle, John F.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (17) : 5065 - 5072
  • [7] Molecular dynamics simulation of the transmembrane transport process of reactive species under the synergistic effect of plasma oxidation and an electric field
    Cui, Yanxiu
    Zhao, Tong
    Wang, Huichao
    Wang, Xiaolong
    Wang, Daohan
    Zhang, Yuantao
    [J]. FREE RADICAL BIOLOGY AND MEDICINE, 2023, 208 : 372 - 383
  • [8] Regulation of Vascular Function and Inflammation via Cross Talk of Reactive Oxygen and Nitrogen Species from Mitochondria or NADPH Oxidase-Implications for Diabetes Progression
    Daiber, Andreas
    Steven, Sebastian
    Vujacic-Mirski, Ksenija
    Kalinovic, Sanela
    Oelze, Matthias
    Di Lisa, Fabio
    Muenzel, Thomas
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (10)
  • [9] Nitration of the mitochondrial complex I subunit NDUFB8 elicits RIP1-and RIP3-mediated necrosis
    Davis, Christiana W.
    Hawkins, Brian J.
    Ramasamy, Subbiah
    Irrinki, Krishna M.
    Cameron, Bruce A.
    Islam, Khalid
    Daswani, Varsha P.
    Doonan, Patrick J.
    Manevich, Yefim
    Madesh, Muniswamy
    [J]. FREE RADICAL BIOLOGY AND MEDICINE, 2010, 48 (02) : 306 - 317
  • [10] Molecular Dynamics Simulations of Lipid Membrane Electroporation
    Delemotte, Lucie
    Tarek, Mounir
    [J]. JOURNAL OF MEMBRANE BIOLOGY, 2012, 245 (09) : 531 - 543