The transfer RNA genes in Oryza sativa L.ssp.inadica

被引:1
作者
王希胤
史晓黎
郝柏林
机构
关键词
tRNA gene; wobble hypothesis; codon usage; pseudo-tRNA gene; Oryza sativa; chloroplast;
D O I
暂无
中图分类号
Q943 [植物细胞遗传学];
学科分类号
071007 ; 090102 ;
摘要
The availability of the draft genome sequence of Oryza sativa L ssp. indica has made it possible to study the rice tRNA genes. A total of 596 tRNA genes, including 3 selenocysteine tRNA genes and one suppressor tRNA gene are identified in 127551 rice contigs. There are 45 species of tRNA genes and the revised wobble hypothesis proposed by Guthrie and Abelson is perfectly obeyed. The relationship between codon usage and the number of corresponding tRNA genes is discussed. Redundancy may exist in the present list of tRNA genes and novel ones may be found in the future. A set of 33 tRNA genes is discovered in the complete chloroplast genome of Oryza sativa L. ssp. indica. These tRNA genes are identical to those in ssp. japonica identified by us independently from the origional annotation.
引用
收藏
页码:504 / 511
页数:8
相关论文
共 50 条
  • [31] Suppression of glutamate synthase genes significantly affects carbon and nitrogen metabolism in rice (Oryza sativa L.)
    Lu YongEn
    Luo Feng
    Yang Meng
    Li XiangHua
    Lian XingMing
    [J]. SCIENCE CHINA-LIFE SCIENCES, 2011, 54 (07) : 651 - 663
  • [33] Indel polymorphism in sugar translocation and transport genes associated with grain filling of rice (Oryza sativa L.)
    Rao, I. Subhakara
    Srikanth, B.
    Kishore, V. Hemanth
    Suresh, P. Balaji
    Chaitanya, U.
    Vemireddy, L. R.
    Voleti, S. R.
    Subbarao, L. V.
    Rani, N. Shobha
    Sundaram, R. M.
    Madhav, M. S.
    Balachandran, S. M.
    Prasad, G. S. V.
    Viraktamath, B. C.
    Neeraja, C. N.
    [J]. MOLECULAR BREEDING, 2011, 28 (04) : 683 - 691
  • [34] IDENTIFICATION OF EARLINESS GENES DERIVED FROM 15 RECIPROCAL TRANSLOCATION HOMOZYGOTES OF RICE, ORYZA-SATIVA L
    SATO, S
    SHINJYO, C
    [J]. BREEDING SCIENCE, 1995, 45 (01) : 45 - 49
  • [35] Codon Usage Biases of Transposable Elements and Host Nuclear Genes in Arabidopsis thaliana and Oryza sativa
    Jia Jia1 and Qingzhong Xue2 1 James D. Watson Institute of Genome Sciences
    2 Department of Agronomy
    [J]. Genomics,Proteomics & Bioinformatics, 2009, (04) : 175 - 184
  • [36] DNA POLYMORPHISMS IN ORYZA-SATIVA L AND LACTUCA-SATIVA L AMPLIFIED BY ARBITRARY PRIMED PCR
    YAMAMOTO, T
    NISHIKAWA, A
    OEDA, K
    [J]. EUPHYTICA, 1994, 78 (1-2) : 143 - 148
  • [37] Inheritance of anthocyanin pigmentation in rice (Oryza sativa L.)
    Hemaprabha, E.
    Thiruvengadam, V.
    Maheswaran, M.
    Shanmugasundaram, R.
    [J]. PLANT ARCHIVES, 2007, 7 (02): : 549 - 552
  • [38] Analysis of GDSL lipase (GLIP) family genes in rice (Oryza sativa)
    Jiang, Yunyun
    Chen, Rongjun
    Dong, Jiali
    Xu, Zhengjun
    Gao, Xiaoling
    [J]. PLANT OMICS, 2012, 5 (04) : 351 - 358
  • [39] PRODUCTION OF TERTIARY TRISOMICS IN RICE (ORYZA-SATIVA L)
    NONOMURA, KI
    YOSHIMURA, A
    KAWASAKI, T
    IWATA, N
    [J]. BREEDING SCIENCE, 1994, 44 (02) : 137 - 142
  • [40] Lodging Resistance of Stems in Rice(Oryza sativa L.)
    Jinxian ZHANG
    Guan RUAN
    Shejian LIANG
    [J]. Plant Diseases and Pests, 2012, (02) : 1 - 5