Draft Genome Sequence of Falsirhodobacter sp. Strain alg1, an Alginate-Degrading Bacterium Isolated from Fermented Brown Algae

被引：6

作者：

Mori, Tetsushi ^{[1
,4
]}

Takahashi, Mami ^{[1
,4
]}

Tanaka, Reiji ^{[2
,4
]}

Shibata, Toshiyuki ^{[2
,4
]}

Kuroda, Kouichi ^{[3
,4
]}

Ueda, Mitsuyoshi ^{[3
,4
]}

Takeyama, Haruko ^{[1
]}

机构：

[1] Waseda Univ, Ctr Adv Biomed Sci, Fac Sci & Engn, Shinju Ku, Tokyo, Japan

[2] Mie Univ, Grad Sch Bioresources, Dept Life Sci, Tsu, Mie, Japan

[3] Kyoto Univ, Grad Sch Agr, Div Appl Life Sci, Sakyo Ku, Kyoto, Japan

[4] JST CREST, Chiyoda Ku, Tokyo, Japan

来源：

GENOME ANNOUNCEMENTS | 2014年 / 2卷 / 04期

基金：

日本科学技术振兴机构;

关键词：

D O I：

10.1128/genomeA.00826-14

中图分类号：

学科分类号：

摘要：

Falsirhodobacter sp. alg1 is an alginate-degrading bacterium, the second species from the nonphototrophic bacterial genus Falsirhodobacter. We report the first draft genome of a bacterium from this genus and point out possible important features related to alginate assimilation and its evolutionary aspects.

引用

页数：2

共 11 条

[1] The RAST server: Rapid annotations using subsystems technology [J].

Aziz, Ramy K. ;

Bartels, Daniela ;

Best, Aaron A. ;

DeJongh, Matthew ;

Disz, Terrence ;

Edwards, Robert A. ;

Formsma, Kevin ;

Gerdes, Svetlana ;

Glass, Elizabeth M. ;

Kubal, Michael ;

Meyer, Folker ;

Olsen, Gary J. ;

Olson, Robert ;

Osterman, Andrei L. ;

Overbeek, Ross A. ;

McNeil, Leslie K. ;

Paarmann, Daniel ;

Paczian, Tobias ;

Parrello, Bruce ;

Pusch, Gordon D. ;

Reich, Claudia ;

Stevens, Rick ;

Vassieva, Olga ;

Vonstein, Veronika ;

Wilke, Andreas ;

Zagnitko, Olga .

BMC GENOMICS, 2008, 9 (1)

[2]

Hoff WD, 2009, METHODS MOL BIOL, V571, P25, DOI 10.1007/978-1-60761-198-1_2

[3] Bacterial pyruvate production from alginate, a promising carbon source from marine brown macroalgae [J].

Kawai, Shigeyuki ;

Ohashi, Kazuto ;

Yoshida, Shiori ;

Fujii, Mari ;

Mikami, Shinichi ;

Sato, Nobuyuki ;

Murata, Kousaku .

JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 2014, 117 (03) :269-274

[4] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data [J].

Kearse, Matthew ;

Moir, Richard ;

Wilson, Amy ;

Stones-Havas, Steven ;

Cheung, Matthew ;

Sturrock, Shane ;

Buxton, Simon ;

Cooper, Alex ;

Markowitz, Sidney ;

Duran, Chris ;

Thierer, Tobias ;

Ashton, Bruce ;

Meintjes, Peter ;

Drummond, Alexei .

BIOINFORMATICS, 2012, 28 (12) :1647-1649

[5] The carbohydrate-active enzymes database (CAZy) in 2013 [J].

Lombard, Vincent ;

Ramulu, Hemalatha Golaconda ;

Drula, Elodie ;

Coutinho, Pedro M. ;

Henrissat, Bernard .

NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D490-D495

[6] The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901T Reveals a Broad Potential for Degradation of Algal Polysaccharides [J].

Mann, Alexander J. ;

Hahnke, Richard L. ;

Huang, Sixing ;

Werner, Johannes ;

Xing, Peng ;

Barbeyron, Tristan ;

Huettel, Bruno ;

Stueber, Kurt ;

Reinhardt, Richard ;

Harder, Jens ;

Gloeckner, Frank Oliver ;

Amann, Rudolf I. ;

Teeling, Hanno .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2013, 79 (21) :6813-6822

[7] The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes [J].

Overbeek, R ;

Begley, T ;

Butler, RM ;

Choudhuri, JV ;

Chuang, HY ;

Cohoon, M ;

de Crécy-Lagard, V ;

Diaz, N ;

Disz, T ;

Edwards, R ;

Fonstein, M ;

Frank, ED ;

Gerdes, S ;

Glass, EM ;

Goesmann, A ;

Hanson, A ;

Iwata-Reuyl, D ;

Jensen, R ;

Jamshidi, N ;

Krause, L ;

Kubal, M ;

Larsen, N ;

Linke, B ;

McHardy, AC ;

Meyer, F ;

Neuweger, H ;

Olsen, G ;

Olson, R ;

Osterman, A ;

Portnoy, V ;

Pusch, GD ;

Rodionov, DA ;

Rückert, C ;

Steiner, J ;

Stevens, R ;

Thiele, I ;

Vassieva, O ;

Ye, Y ;

Zagnitko, O ;

Vonstein, V .

NUCLEIC ACIDS RESEARCH, 2005, 33 (17) :5691-5702

[8]

Solovyev V, 2011, METAGENOMICITAPP, P61

[9] Falsirhodobacter halotolerans gen. nov., sp nov., isolated from dry soils of a solar saltern [J].

Subhash, Y. ;

Tushar, L. ;

Sasikala, Ch ;

Ramana, Ch V. .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :2132-2137

[10] Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides [J].

Thomas, Francois ;

Barbeyron, Tristan ;

Tonon, Thierry ;

Genicot, Sabine ;

Czjzek, Mirjam ;

Michel, Gurvan .

ENVIRONMENTAL MICROBIOLOGY, 2012, 14 (09) :2379-2394

← 1 2 →