THE RIBOSOMAL DATABASE PROJECT

被引:623
作者
MAIDAK, BL
LARSEN, N
MCCAUGHEY, MJ
OVERBEEK, R
OLSEN, GJ
FOGEL, K
BLANDY, J
WOESE, CR
机构
[1] ARGONNE NATL LAB,DIV MATH & COMP SCI,ARGONNE,IL 60439
[2] INDIANA UNIV,DEPT BIOL,BLOOMINGTON,IN 47405
基金
美国国家科学基金会;
关键词
D O I
10.1093/nar/22.17.3485
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Ribosomal Database Project (RDP) is a curated database that offers ribosome-related data, analysis services, and associated computer programs. The offerings include phylogenetically ordered alignments of ribosomal RNA (rRNA) sequences, derived phylogenetic trees, rRNA secondary structure diagrams, and various software for handling, analyzing and displaying alignments and trees. The data are available via anonymous ftp (rdp.life.uiuc.edu), electronic mail (server@rdp.life.uiuc.edu) and gopher (rdpgopher.life.uiuc.edu). The electronic mail server also provides ribosomal probe checking, approximate phylogenetic placement of user-submitted sequences, screening for chimeric nature of newly sequenced rRNAs, and automated alignment.
引用
收藏
页码:3485 / 3487
页数:3
相关论文
共 6 条
[1]   GENBANK [J].
BENSON, D ;
LIPMAN, DJ ;
OSTELL, J .
NUCLEIC ACIDS RESEARCH, 1993, 21 (13) :2963-2965
[2]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[3]   COLLECTION OF SMALL-SUBUNIT (16S- AND 16S-LIKE) RIBOSOMAL-RNA STRUCTURES - 1994 [J].
GUTELL, RR .
NUCLEIC ACIDS RESEARCH, 1994, 22 (17) :3502-3507
[4]   THE RIBOSOMAL DATABASE PROJECT [J].
LARSEN, N ;
OLSEN, GJ ;
MAIDAK, BL ;
MCCAUGHEY, MJ ;
OVERBEEK, R ;
MACKE, TJ ;
MARSH, TL ;
WOESE, CR .
NUCLEIC ACIDS RESEARCH, 1993, 21 (13) :3021-3023
[5]  
OLSEN GJ, 1994, COMPUT APPL BIOSCI, V10, P41
[6]   THE EMBL DATA LIBRARY [J].
RICE, CM ;
FUCHS, R ;
HIGGINS, DG ;
STOEHR, PJ ;
CAMERON, GN .
NUCLEIC ACIDS RESEARCH, 1993, 21 (13) :2967-2971