Complete Genome Sequencing of a Multidrug-Resistant and Human-Invasive Salmonella enterica Serovar Typhimurium Strain of the Emerging Sequence Type 213 Genotype

被引：10

作者：

Calva, Edmundo ^{[1
]}

Silva, Claudia ^{[1
]}

Zaidi, Mussaret B. ^{[2
,3
]}

Sanchez-Flores, Alejandro ^{[4
]}

Estrada, Karel ^{[4
]}

Silva, Genivaldo G. Z. ^{[5
]}

Soto-Jimenez, Luz M. ^{[1
]}

Wiesner, Magdalena ^{[1
]}

Fernandez-Mora, Marcos ^{[1
]}

Edwards, Robert A. ^{[5
,6
,7
]}

Vinuesa, Pablo ^{[8
]}

机构：

[1] Univ Nacl Autonoma Mexico, Inst Biotecnol, Dept Microbiol Mol, Cuernavaca, Morelos, Mexico

[2] Hosp Gen OHoran, Microbiol Res Lab, Merida, Yucatan, Mexico

[3] Hosp Reg Alta Especialidad Peninsula Yucatan, Infect Dis Res Unit, Merida, Yucatan, Mexico

[4] Univ Nacl Autonoma Mexico, Unidad Univ Apoyo Bioinformat, Cuernavaca, Morelos, Mexico

[5] San Diego State Univ, Computat Sci Res Ctr, San Diego, CA 92182 USA

[6] San Diego State Univ, Dept Comp Sci, San Diego, CA 92182 USA

[7] Argonne Natl Lab, Div Math & Comp Sci, 9700 S Cass Ave, Argonne, IL 60439 USA

[8] Univ Nacl Autonoma Mexico, Programa Ingn Genom, Ctr Ciencias Genom, Cuernavaca, Morelos, Mexico

来源：

GENOME ANNOUNCEMENTS | 2015年 / 3卷 / 03期

基金：

美国国家科学基金会;

关键词：

D O I：

10.1128/genomeA.00663-15

中图分类号：

学科分类号：

摘要：

Salmonella enterica subsp. enterica serovar Typhimurium strain YU39 was isolated in 2005 in the state of Yucatan, Mexico, from a human systemic infection. The YU39 strain is representative of the multidrug-resistant emergent sequence type 213 (ST213) genotype. The YU39 complete genome is composed of a chromosome and seven plasmids.

引用

页数：2

共 14 条

[1] Trimmomatic: a flexible trimmer for Illumina sequence data [J].

Bolger, Anthony M. ;

Lohse, Marc ;

Usadel, Bjoern .

BIOINFORMATICS, 2014, 30 (15) :2114-2120

[2]

Chin CS, 2013, NAT METHODS, V10, P563, DOI [10.1038/NMETH.2474, 10.1038/nmeth.2474]

[3] IslandViewer update: improved genomic island discovery and visualization [J].

Dhillon, Bhavjinder K. ;

Chiu, Terry A. ;

Laird, Matthew R. ;

Langille, Morgan G. I. ;

Brinkman, Fiona S. L. .

NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) :W129-W132

[4] Fast and accurate long-read alignment with Burrows-Wheeler transform [J].

Li, Heng ;

Durbin, Richard .

BIOINFORMATICS, 2010, 26 (05) :589-595

[5] Fast and accurate short read alignment with Burrows-Wheeler transform [J].

Li, Heng ;

Durbin, Richard .

BIOINFORMATICS, 2009, 25 (14) :1754-1760

[6]

Sambrook J., 2001, MOL CLONING LAB MANU

[7] Prokka: rapid prokaryotic genome annotation [J].

Seemann, Torsten .

BIOINFORMATICS, 2014, 30 (14) :2068-2069

[8]

Treangen Todd J, 2011, Curr Protoc Bioinformatics, VChapter 11, DOI 10.1002/0471250953.bi1108s33

[9] Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement [J].

Walker, Bruce J. ;

Abeel, Thomas ;

Shea, Terrance ;

Priest, Margaret ;

Abouelliel, Amr ;

Sakthikumar, Sharadha ;

Cuomo, Christina A. ;

Zeng, Qiandong ;

Wortman, Jennifer ;

Young, Sarah K. ;

Earl, Ashlee M. .

PLOS ONE, 2014, 9 (11)

[10] Conjugative transfer of an IncA/C plasmid-borne blaCMY-2 gene through genetic re-arrangements with an IncX1 plasmid [J].

Wiesner, Magdalena ;

Fernandez-Mora, Marcos ;

Cevallos, Miguel A. ;

Zavala-Alvarado, Crispin ;

Zaidi, Mussaret B. ;

Calva, Edmundo ;

Silva, Claudia .

BMC MICROBIOLOGY, 2013, 13

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