RNA-sequencing data analysis of uterus in ovariectomized rats fed with soy protein isolate, 17 beta-estradiol and casein

被引:0
作者
Ronis, Martin J. [1 ,2 ]
Gomez-Acevedo, Horacio [2 ,3 ]
Blackburn, Michael L. [2 ]
Cleves, Mario A. [2 ]
Singhal, Rohit [2 ]
Badger, Thomas M. [2 ]
机构
[1] LSUHSC New Orelans, Dept Pharmacol & Expt Therapeut, New Orleans, LA 70112 USA
[2] Arkansas Childrens Nutr Ctr, Little Rock, AR USA
[3] UAMS, Dept Biomed Informat, Little Rock, AR USA
来源
DATA IN BRIEF | 2016年 / 7卷
基金
美国农业部;
关键词
D O I
10.1016/j.dib.2016.04.033
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
This data file describes the bioinformatics analysis of uterine RNA-seq data comparing genome wide effects of feeding soy protein isolate compared to casein to ovariectomized female rats age 64 days relative to treatment of casein fed rats with 5 tig/kg/d estradiol and relative to rats treated with estradiol and also fed soy protein isolate. Complete raw data files were deposited in the gene Expression Omnibus (GEO) at NCBI (http:/www.ncbi.nlm.nih.gov.geo/) under the GEO accession number GEO: GSE69819. Data presented here incudes a summary of the differential expression analysis with top 30 genes up- and down-regulated by soy protein isolate (SPI), estradiol (E2) and SPI+ E2. Additional functional annotation analysis of KEGG pathways is also presented for each treatment, together with networks of interaction between those pathways. Further interpretation and discussion of this data can be found in the article "Uterine responses to feeding soy protein isolate and treatment with 17 beta-estradiol differ in ovariectomized female rats" Ronis et al. (2016) [1]. (C) 2016 The Authors. Published by Elsevier Inc.
引用
收藏
页码:1491 / 1496
页数:6
相关论文
共 11 条
  • [1] The health implications of soy infant formula
    Badger, Thomas M.
    Gilchrist, Janet M.
    Pivik, R. Terry
    Andres, Aline
    Shankar, Kartik
    Chen, Jin-Ran
    Ronis, Martin J.
    [J]. AMERICAN JOURNAL OF CLINICAL NUTRITION, 2009, 89 (05) : S1668 - S1672
  • [2] The Reactome pathway knowledgebase
    Croft, David
    Mundo, Antonio Fabregat
    Haw, Robin
    Milacic, Marija
    Weiser, Joel
    Wu, Guanming
    Caudy, Michael
    Garapati, Phani
    Gillespie, Marc
    Kamdar, Maulik R.
    Jassal, Bijay
    Jupe, Steven
    Matthews, Lisa
    May, Bruce
    Palatnik, Stanislav
    Rothfels, Karen
    Shamovsky, Veronica
    Song, Heeyeon
    Williams, Mark
    Birney, Ewan
    Hermjakob, Henning
    Stein, Lincoln
    D'Eustachio, Peter
    [J]. NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) : D472 - D477
  • [3] Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    Huang, Da Wei
    Sherman, Brad T.
    Lempicki, Richard A.
    [J]. NATURE PROTOCOLS, 2009, 4 (01) : 44 - 57
  • [4] Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    Huang, Da Wei
    Sherman, Brad T.
    Lempicki, Richard A.
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 (01) : 1 - 13
  • [5] Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
    Merico, Daniele
    Isserlin, Ruth
    Stueker, Oliver
    Emili, Andrew
    Bader, Gary D.
    [J]. PLOS ONE, 2010, 5 (11):
  • [6] Milacic Marija, 2012, Cancers (Basel), V4, P1180, DOI 10.3390/cancers4041180
  • [7] AIN-93 PURIFIED DIETS FOR LABORATORY RODENTS - FINAL REPORT OF THE AMERICAN INSTITUTE OF NUTRITION AD HOC WRITING COMMITTEE ON THE REFORMULATION OF THE AIN-76A RODENT DIET
    REEVES, PG
    NIELSEN, FH
    FAHEY, GC
    [J]. JOURNAL OF NUTRITION, 1993, 123 (11) : 1939 - 1951
  • [8] Uterine responses to feeding soy protein isolate and treatment with 17β-estradiol differ in ovariectomized female rats
    Ronis, Martin J.
    Gomez-Acevedo, Horacio
    Blackburn, Michael L.
    Cleves, Mario A.
    Singhal, Rohit
    Badger, Thomas M.
    [J]. TOXICOLOGY AND APPLIED PHARMACOLOGY, 2016, 297 : 68 - 80
  • [9] Hepatic gene expression following consumption of soy protein isolate in female Sprague-Dawley rats differs from that produced by 17β-estradiol treatment
    Singhal, Rohit
    Shankar, Kartik
    Badger, Thomas M.
    Ronis, Martin J.
    [J]. JOURNAL OF ENDOCRINOLOGY, 2009, 202 (01) : 141 - 152
  • [10] Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    Trapnell, Cole
    Williams, Brian A.
    Pertea, Geo
    Mortazavi, Ali
    Kwan, Gordon
    van Baren, Marijke J.
    Salzberg, Steven L.
    Wold, Barbara J.
    Pachter, Lior
    [J]. NATURE BIOTECHNOLOGY, 2010, 28 (05) : 511 - U174