De novo transcriptome assembly associated with fumonisin production by the rice pathogen Fusarium fujikuroi

被引:1
|
作者
Guruge, Keerthi S. [1 ,2 ,3 ]
Uegaki, Ryuichi [1 ]
机构
[1] Natl Agr & Food Res Org, Natl Inst Anim Hlth, Pathol & Pathophysiol Res Div, Kannondai 3-1-5, Tsukuba, Ibaraki 3050856, Japan
[2] Osaka Prefecture Univ, Grad Sch Life & Environm Sci, Osaka, Japan
[3] Univ Southern Queensland, Ctr Crop Hlth, Toowoomba Campus, Toowoomba, Qld 4350, Australia
来源
DATA IN BRIEF | 2018年 / 18卷
基金
日本学术振兴会;
关键词
Fusarium fujikuroi; Fumonisin; Next-generation sequencing; Transcriptome; Gene-expression;
D O I
10.1016/j.dib.2018.02.072
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The present study employed a next-generation sequencing method to assemble a de novo transcriptome database designed to distinguish gene expression changes exhibited by the fumonisin-producing fungus Fusarium fujikuroi when grown under 'fumonisin-producing' compared to 'non-fumonisin-producing' conditions. The raw data of this study have been deposited at DNA Data Bank of Japan (DDBJ) under the accession ID DRA006146. (C) 2018 The Authors. Published by Elsevier Inc.
引用
收藏
页码:35 / 39
页数:5
相关论文
共 50 条
  • [31] A Bayesian approach for accurate de novo transcriptome assembly
    Shi, Xu
    Wang, Xiao
    Neuwald, Andrew F.
    Halakivi-Clarke, Leena
    Clarke, Robert
    Xuan, Jianhua
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [32] Effect of de novo transcriptome assembly on transcript quantification
    Ping-Han Hsieh
    Yen-Jen Oyang
    Chien-Yu Chen
    Scientific Reports, 9
  • [33] Parallelization of the Trinity pipeline for de novo transcriptome assembly
    Sachdeva, V.
    Kim, C. S.
    Jordan, K. E.
    Winn, M. D.
    PROCEEDINGS OF 2014 IEEE INTERNATIONAL PARALLEL & DISTRIBUTED PROCESSING SYMPOSIUM WORKSHOPS (IPDPSW), 2014, : 567 - 576
  • [34] Effect of de novo transcriptome assembly on transcript quantification
    Hsieh, Ping-Han
    Oyang, Yen-Jen
    Chen, Chien-Yu
    SCIENTIFIC REPORTS, 2019, 9 (1)
  • [35] De novo assembly and characterization of the Hucho taimen transcriptome
    Tong, Guang-Xiang
    Xu, Wei
    Zhang, Yong-Quan
    Zhang, Qing-Yu
    Yin, Jia-Sheng
    Kuang, You-Yi
    ECOLOGY AND EVOLUTION, 2018, 8 (02): : 1271 - 1285
  • [36] De novo assembly of the transcriptome of Acanthaster planci testes
    Stewart, Michael James
    Stewart, Praphaporn
    Rivera-Posada, Jairo
    MOLECULAR ECOLOGY RESOURCES, 2015, 15 (04) : 953 - 966
  • [37] De novo assembly and characterisation of the transcriptome of the Beringian pseudoscorpion
    Lebenzon, Jacqueline E.
    Toxopeus, Jantina
    Anthony, Susan E.
    Sinclair, Brent J.
    CANADIAN ENTOMOLOGIST, 2021, 153 (03): : 301 - 313
  • [38] De novo assembly and annotation of the Acropora gemmifera transcriptome
    Oldach, Matthew J.
    Vize, Peter D.
    MARINE GENOMICS, 2018, 40 : 9 - 12
  • [39] Informed kmer selection for de novo transcriptome assembly
    Durai, Dilip A.
    Schulz, Marcel H.
    BIOINFORMATICS, 2016, 32 (11) : 1670 - 1677
  • [40] A decade of de novo transcriptome assembly: Are we there yet?
    Hoelzer, Martin
    MOLECULAR ECOLOGY RESOURCES, 2021, 21 (01) : 11 - 13