GEL-ELECTROPHORETIC FRACTIONATION OF RNAS BY PARTIAL DENATURATION WITH METHYLMERCURIC HYDROXIDE

被引:35
作者
CHANDLER, PM [1 ]
RIMKUS, D [1 ]
DAVIDSON, N [1 ]
机构
[1] CALTECH,DEPT CHEM,PASADENA,CA 91125
基金
美国国家卫生研究院;
关键词
D O I
10.1016/0003-2697(79)90063-0
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The changes in agarose gel electrophoretic velocities of several RNAs of varying molecular weight and base composition with concentration of the denaturant, methylmercuric hydroxide (MMH), have been studied. At intermediate MMH concentrations, the mobility of any one species is intermediate between the native" (no MMH) and fully denatured (5 mm MMH) values. A + U-richer RNAs are partially denatured at lower concentrations of MMH than are G + C-richer RNAs. Electrophoresis at intermediate MMH concentrations is useful for resolving some RNA species that are not well resolved either in the absence of MMH or under fully denaturing (5 mm MMH) conditions. It is shown that it is possible to carry out MMH electrophoresis in polyacrylamide gels; this is useful for low molecular weight RNAs. An equation to correlate changes in mobility between the native and denatured states is proposed. © 1979."
引用
收藏
页码:200 / 206
页数:7
相关论文
共 20 条
[1]   STRUCTURE AND SYNTHESIS OF RIBOSOMAL RNA [J].
ATTARDI, G ;
AMALDI, F .
ANNUAL REVIEW OF BIOCHEMISTRY, 1970, 39 :183-+
[2]   METHYLMERCURY AS A REVERSIBLE DENATURING AGENT FOR AGAROSE-GEL ELECTROPHORESIS [J].
BAILEY, JM ;
DAVIDSON, N .
ANALYTICAL BIOCHEMISTRY, 1976, 70 (01) :75-85
[3]   HIGH-MOLECULAR-WEIGHT RNAS OF AKR, NZB, AND WILD MOUSE VIRUSES AND AVIAN RETICULOENDOTHELIOSIS VIRUS ALL HAVE SIMILAR DIMER STRUCTURES [J].
BENDER, W ;
CHIEN, YH ;
CHATTOPADHYAY, S ;
VOGT, PK ;
GARDNER, MB ;
DAVIDSON, N .
JOURNAL OF VIROLOGY, 1978, 25 (03) :888-896
[4]   NUCLEOTIDE-SEQUENCE OF DROSOPHILA-MELANOGASTER 5S-RNA - EVIDENCE FOR A GENERAL 5S-RNA MODEL [J].
BENHAMOU, J ;
JORDAN, BR .
FEBS LETTERS, 1976, 62 (02) :146-149
[5]  
BLOOMFIELD V, 1974, PHYSICAL CHEM NUCLEI, P168
[6]  
BOEDTKER H, 1968, METHODS ENZYMOL B, V12, P429
[7]  
BROSIUS J, 1978, P NAT ACAD SCI US, V75, P4824
[8]   NUCLEOTIDE SEQUENCE OF 5S-RIBOSOMAL RNA FROM ESCHERICHIA COLI [J].
BROWNLEE, GG ;
SANGER, F ;
BARRELL, BG .
NATURE, 1967, 215 (5102) :735-&
[9]   MOLECULAR ANALYSIS OF HISTONE GENE CLUSTER OF PSAMMECHINUS MILIARIS .1. FRACTIONATION AND IDENTIFICATION OF 5 INDIVIDUAL HISTONE MESSENGER-RNAS [J].
GROSS, K ;
PROBST, E ;
SCHAFFNER, W ;
BIRNSTIEL, M .
CELL, 1976, 8 (04) :455-469
[10]   COMPLEXING AND DENATURATION OF DNA BY METHYLMERCURIC HYDROXIDE .1. SPECTROPHOTOMETRIC STUDIES [J].
GRUENWEDEL, DW ;
DAVIDSON, N .
JOURNAL OF MOLECULAR BIOLOGY, 1966, 21 (01) :129-+