Draft Genome Sequence of Pseudomonas putida Strain MTCC5279

被引：7

作者：

Chaudhry, Vasvi ^{[1
]}

Asif, Mehar H. ^{[1
]}

Bag, Sumit ^{[1
]}

Goel, Ridhi ^{[1
]}

Mantri, Shrikant S. ^{[1
]}

Singh, Sunil K. ^{[1
]}

Chauhan, Puneet S. ^{[1
]}

Sawant, Samir, V ^{[1
]}

Nautiyal, Chandra Shekhar ^{[1
]}

机构：

[1] Natl Bot Res Inst, CSIR, Rana Pratap Marg, Lucknow, Uttar Pradesh, India

来源：

GENOME ANNOUNCEMENTS | 2013年 / 1卷 / 04期

关键词：

D O I：

10.1128/genomeA.00560-13

中图分类号：

学科分类号：

摘要：

Here we report the genome sequence of a plant-growth-promoting rhizobacterium, Pseudomonas putida strain MTCC5279. The length of the draft genome sequence is approximately 5.2 Mb, with a GC content of 62.5%. The draft genome sequence reveals a number of genes whose products are possibly involved in plant growth promotion and abiotic stress tolerance.

引用

页数：2

共 7 条

[1] The RAST server: Rapid annotations using subsystems technology [J].

Aziz, Ramy K. ;

Bartels, Daniela ;

Best, Aaron A. ;

DeJongh, Matthew ;

Disz, Terrence ;

Edwards, Robert A. ;

Formsma, Kevin ;

Gerdes, Svetlana ;

Glass, Elizabeth M. ;

Kubal, Michael ;

Meyer, Folker ;

Olsen, Gary J. ;

Olson, Robert ;

Osterman, Andrei L. ;

Overbeek, Ross A. ;

McNeil, Leslie K. ;

Paarmann, Daniel ;

Paczian, Tobias ;

Parrello, Bruce ;

Pusch, Gordon D. ;

Reich, Claudia ;

Stevens, Rick ;

Vassieva, Olga ;

Vonstein, Veronika ;

Wilke, Andreas ;

Zagnitko, Olga .

BMC GENOMICS, 2008, 9 (1)

[2] Improved microbial gene identification with GLIMMER [J].

Delcher, AL ;

Harmon, D ;

Kasif, S ;

White, O ;

Salzberg, SL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (23) :4636-4641

[3] RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].

Lagesen, Karin ;

Hallin, Peter ;

Rodland, Einar Andreas ;

Stærfeldt, Hans-Henrik ;

Rognes, Torbjorn ;

Ussery, David W. .

NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108

[4] KAAS: an automatic genome annotation and pathway reconstruction server [J].

Moriya, Yuki ;

Itoh, Masumi ;

Okuda, Shujiro ;

Yoshizawa, Akiyasu C. ;

Kanehisa, Minoru .

NUCLEIC ACIDS RESEARCH, 2007, 35 :W182-W185

[5] Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 [J].

Nelson, KE ;

Weinel, C ;

Paulsen, IT ;

Dodson, RJ ;

Hilbert, H ;

dos Santos, VAPM ;

Fouts, DE ;

Gill, SR ;

Pop, M ;

Holmes, M ;

Brinkac, L ;

Beanan, M ;

DeBoy, RT ;

Daugherty, S ;

Kolonay, J ;

Madupu, R ;

Nelson, W ;

White, O ;

Peterson, J ;

Khouri, H ;

Hance, I ;

Lee, PC ;

Holtzapple, E ;

Scanlan, D ;

Tran, K ;

Moazzez, A ;

Utterback, T ;

Rizzo, M ;

Lee, K ;

Kosack, D ;

Moestl, D ;

Wedler, H ;

Lauber, J ;

Stjepandic, D ;

Hoheisel, J ;

Straetz, M ;

Heim, S ;

Kiewitz, C ;

Eisen, J ;

Timmis, KN ;

Düsterhöft, A ;

Tümmler, B ;

Fraser, CM .

ENVIRONMENTAL MICROBIOLOGY, 2002, 4 (12) :799-808

[6] Gene expression profiling through microarray analysis in Arabidopsis thaliana colonized by Pseudomonas putida MTCC5279, a plant growth promoting rhizobacterium [J].

Srivastava, Suchi ;

Chaudhry, Vasvi ;

Mishra, Aradhana ;

Chauhan, Puneet Singh ;

Rehman, Ateequr ;

Yadav, Archana ;

Tuteja, Narendra ;

Nautiyal, Chandra Shekhar .

PLANT SIGNALING & BEHAVIOR, 2012, 7 (02) :235-245

[7] The COG database: new developments in phylogenetic classification of proteins from complete genomes [J].

Tatusov, RL ;

Natale, DA ;

Garkavtsev, IV ;

Tatusova, TA ;

Shankavaram, UT ;

Rao, BS ;

Kiryutin, B ;

Galperin, MY ;

Fedorova, ND ;

Koonin, EV .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :22-28

← 1 →