REVERSIBLE MULTIPLE TIME SCALE MOLECULAR-DYNAMICS

被引:2904
|
作者
TUCKERMAN, M [1 ]
BERNE, BJ [1 ]
MARTYNA, GJ [1 ]
机构
[1] UNIV PENN,DEPT CHEM,PHILADELPHIA,PA 19104
来源
JOURNAL OF CHEMICAL PHYSICS | 1992年 / 97卷 / 03期
关键词
D O I
10.1063/1.463137
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The Trotter factorization of the Liouville propagator is used to generate new reversible molecular dynamics integrators. This strategy is applied to derive reversible reference system propagator algorithms (RESPA) that greatly accelerate simulations of systems with a separation of time scales or with long range forces. The new algorithms have all of the advantages of previous RESPA integrators but are reversible, and more stable than those methods. These methods are applied to a set of paradigmatic systems and are shown to be superior to earlier methods. It is shown how the new RESPA methods are related to predictor-corrector integrators. Finally, we show how these methods can be used to accelerate the integration of the equations of motion of systems with Nose thermostats.
引用
收藏
页码:1990 / 2001
页数:12
相关论文
共 50 条
  • [11] MOLECULAR-DYNAMICS SIMULATION OF PARVALBUMIN WITH A MULTIPLE TIME STEP METHOD
    TELEMAN, O
    AHLSTROM, P
    JONSSON, B
    BIOPHYSICAL JOURNAL, 1985, 47 (02) : A399 - A399
  • [12] MOLECULAR-DYNAMICS ALGORITHM FOR CONDENSED SYSTEMS WITH MULTIPLE TIME SCALES
    TUCKERMAN, ME
    MARTYNA, GJ
    BERNE, BJ
    JOURNAL OF CHEMICAL PHYSICS, 1990, 93 (02): : 1287 - 1291
  • [13] Advanced multiple time scale molecular dynamics
    Omelyan, Igor P.
    JOURNAL OF CHEMICAL PHYSICS, 2009, 131 (10):
  • [14] A reversible averaging integrator for multiple time-scale dynamics
    Leimkuhler, B
    Reich, S
    JOURNAL OF COMPUTATIONAL PHYSICS, 2001, 171 (01) : 95 - 114
  • [15] MOLECULAR-DYNAMICS AND TIME REVERSIBILITY
    LEVESQUE, D
    VERLET, L
    JOURNAL OF STATISTICAL PHYSICS, 1993, 72 (3-4) : 519 - 537
  • [16] MULTIPLE TIME STEP METHODS IN MOLECULAR-DYNAMICS SIMULATIONS OF POLYATOMIC FLUIDS
    STREETT, WB
    TILDESLEY, DJ
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1978, 175 (MAR): : 12 - 12
  • [17] STOCHASTIC MOLECULAR-DYNAMICS IN SYSTEMS WITH MULTIPLE TIME SCALES AND MEMORY FRICTION
    TUCKERMAN, ME
    BERNE, BJ
    JOURNAL OF CHEMICAL PHYSICS, 1991, 95 (06): : 4389 - 4396
  • [18] MOLECULAR-DYNAMICS ALGORITHM FOR MULTIPLE TIME SCALES - SYSTEMS WITH DISPARATE MASSES
    TUCKERMAN, ME
    BERNE, BJ
    ROSSI, A
    JOURNAL OF CHEMICAL PHYSICS, 1991, 94 (02): : 1465 - 1469
  • [19] TIME REVERSIBLE AND PHASE-SPACE CONSERVING MOLECULAR-DYNAMICS AT CONSTANT-TEMPERATURE
    WINKLER, RG
    KRAUS, V
    REINEKER, P
    JOURNAL OF CHEMICAL PHYSICS, 1995, 102 (22): : 9018 - 9025
  • [20] A parallel multiple time-scale reversible integrator for dynamics simulation
    Jia, ZD
    Leimkuhler, B
    FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2003, 19 (03): : 415 - 424