QM/MM Study on the Mechanism of Aminophenol Oxidation by Functionalized beta-Cyclodextrin as Oxidase Nanomimic

被引:1
|
作者
Barani, E. [1 ]
Izadyar, M. [1 ]
Housaindokht, M. R. [1 ]
机构
[1] Ferdowsi Univ Mashhad, Fac Sci, Dept Chem, Mashhad, Iran
来源
PHYSICAL CHEMISTRY RESEARCH | 2016年 / 4卷 / 04期
关键词
beta-Cyclodextrin; Aminophenol; Oxidase enzyme; Nanomimic; Hydrogen peroxide; Quinine imine; Biocatalyst;
D O I
10.22036/pcr.2016.15366
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In this study, functionalized beta-cyclodextrin (beta-CD) by aldehyde group was investigated as an oxidase enzyme mimic for the amino phenol oxidation. All calculations were performed by GAUSSIAN 09 package using two layers ONIOM method at the ONIOM (MPW1PW91/6-311++G(d,p)/UFF) level. In the first step, H2O2 is encapsulated in the hydrophobic cavity. In the second step, H2O2 molecule oxidized the aldehyde group of the functionalized beta-CD, through the wide edge of beta-CD. This step is the Rate Determining Step (RDS) with the activation energy of 54.4 kcal mol(-1). Natural population analysis has been performed for calculation of the global electron density transfer of the atoms involved at the center of the reaction. In order to have a knowledge of the intermolecular interactions, HOMO-LUMO analysis has been done and showed a reduction in the chemical hardness during the reaction. Topological analysis of the structures at the RDS confirmed that the ratio of the potential to the kinetic energy density for the O-O bond at the transition state is covalent in nature.
引用
收藏
页码:519 / 530
页数:12
相关论文
共 50 条
  • [1] QM/MM study of the reaction mechanism of sulfite oxidase
    Caldararu, Octav
    Feldt, Milica
    Cioloboc, Daniela
    van Severen, Marie-Celine
    Starke, Kerstin
    Mata, Ricardo A.
    Nordlander, Ebbe
    Ryde, Ulf
    SCIENTIFIC REPORTS, 2018, 8
  • [2] QM/MM study of the reaction mechanism of sulfite oxidase
    Octav Caldararu
    Milica Feldt
    Daniela Cioloboc
    Marie-Céline van Severen
    Kerstin Starke
    Ricardo A. Mata
    Ebbe Nordlander
    Ulf Ryde
    Scientific Reports, 8
  • [3] MECHANISM OF PHOSPHODIESTER CLEAVAGE WITH BETA-CYCLODEXTRIN
    HENGGE, AC
    CLELAND, WW
    JOURNAL OF ORGANIC CHEMISTRY, 1991, 56 (05): : 1972 - 1974
  • [4] beta-Cyclodextrin in aqueous solution: MM and semiempirical calculations
    Margheritis, C
    Sinistri, C
    FARMACO, 1997, 52 (6-7): : 435 - 438
  • [5] CYCLODEXTRIN AS A LIGASE-OXIDASE MODEL - SPECIFIC ALLYLATION-OXIDATION OF HYDROQUINONE DERIVATIVES INCLUDED BY BETA-CYCLODEXTRIN
    TABUSHI, I
    KURODA, Y
    FUJITA, K
    KAWAKUBO, H
    TETRAHEDRON LETTERS, 1978, (24) : 2083 - 2086
  • [6] STUDY INTO THE CLATHRATION OF BETA-CYCLODEXTRIN WITH METAPROGEROL
    KLOCHKOV, SV
    KOMPANTSEVA, YV
    BERDNIK, YN
    BOTEZATBELYI, YK
    BABILEV, FV
    KHIMIKO-FARMATSEVTICHESKII ZHURNAL, 1991, 25 (11): : 67 - 69
  • [7] CALORIMETRIC STUDY OF BETA-CYCLODEXTRIN UNDECAHYDRATE
    HANABATA, H
    MATSUO, T
    SUGA, H
    JOURNAL OF INCLUSION PHENOMENA, 1987, 5 (03): : 325 - 333
  • [8] Adsorption of Fatty Acid on Beta-Cyclodextrin Functionalized Cellulose Nanofiber
    Manas, Nor Hasmaliana Abdul
    Kumar, Nurhidayah Kumar Muhammad Firdaus
    Mohd Shah, Nurul Aqilah
    Ling, Guang Yik
    Azelee, Nur Izyan Wan
    Fuzi, Siti Fatimah Zaharah Mohd
    Masngut, Nasratun
    Bunyamin, Muhammad Abd Hadi
    Illias, Rosli Md.
    El Enshasy, Hesham Ali
    SUSTAINABILITY, 2023, 15 (02)
  • [9] Comparison of beta-cyclodextrin effect on polyphenol oxidation catalyzed by purified polyphenol oxidase from different sources
    Fayad, N
    Marchal, L
    Billaud, C
    Nicolas, J
    JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 1997, 45 (07) : 2442 - 2446
  • [10] Reaction Mechanism of Monoamine Oxidase from QM/MM Calculations
    Abad, Enrique
    Zenn, Roland K.
    Kaestner, Johannes
    JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (46): : 14238 - 14246