Genome Sequences of Two Pseudoalteromonas Strains Isolated from the South China Sea

被引：7
作者：
Zeng, Zhenshun [1 ]
Dai, Shikun [1 ]
Xie, Yunchang [1 ]
Tian, Xinpeng [1 ]
Li, Jie [1 ]
Wang, Xiaoxue [1 ]
机构：
[1] Chinese Acad Sci, South China Sea Inst Onceanol, Key Lab Trop Marine Biores & Ecol, Guangzhou, Guangdong, Peoples R China
来源：
GENOME ANNOUNCEMENTS | 2014年 / 2卷 / 02期
基金：
美国国家科学基金会;
关键词：
D O I：
10.1128/genomeA.00305-14
中图分类号：
学科分类号：
摘要：
Two Pseudoalteromonas strains, SCSIO 04301 and SCSIO 11900, were isolated from the South China Sea, and both strains form biofilms. Here we present the draft genome sequences of these two strains, which will aid the study of marine microbes that are adapted to marine sediments or are associated with eukaryotic hosts.
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共 10 条
[1]   Improved microbial gene identification with GLIMMER [J].
Delcher, AL ;
Harmon, D ;
Kasif, S ;
White, O ;
Salzberg, SL .
NUCLEIC ACIDS RESEARCH, 1999, 27 (23) :4636-4641
[2]   Identifying bacterial genes and endosymbiont DNA with Glimmer [J].
Delcher, Arthur L. ;
Bratke, Kirsten A. ;
Powers, Edwin C. ;
Salzberg, Steven L. .
BIOINFORMATICS, 2007, 23 (06) :673-679
[3]   PHYLOGENETIC ANALYSIS OF THE GENERA ALTEROMONAS, SHEWANELLA, AND MORITELLA USING GENES-CODING FOR SMALL-SUBUNIT RIBOSOMAL-RNA SEQUENCES AND DIVISION OF THE GENUS ALTEROMONAS INTO 2 GENERA, ALTEROMONAS (EMENDED) AND PSEUDOALTEROMONAS GEN-NOV, AND PROPOSAL OF 12 NEW SPECIES COMBINATIONS [J].
GAUTHIER, G ;
GAUTHIER, M ;
CHRISTEN, R .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1995, 45 (04) :755-761
[4]  
Holmstrom C, 1999, FEMS MICROBIOL ECOL, V30, P285, DOI 10.1111/j.1574-6941.1999.tb00656.x
[5]   RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].
Lagesen, Karin ;
Hallin, Peter ;
Rodland, Einar Andreas ;
Stærfeldt, Hans-Henrik ;
Rognes, Torbjorn ;
Ussery, David W. .
NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108
[6]   SOAP: short oligonucleotide alignment program [J].
Li, Ruiqiang ;
Li, Yingrui ;
Kristiansen, Karsten ;
Wang, Jun .
BIOINFORMATICS, 2008, 24 (05) :713-714
[7]   De novo assembly of human genomes with massively parallel short read sequencing [J].
Li, Ruiqiang ;
Zhu, Hongmei ;
Ruan, Jue ;
Qian, Wubin ;
Fang, Xiaodong ;
Shi, Zhongbin ;
Li, Yingrui ;
Li, Shengting ;
Shan, Gao ;
Kristiansen, Karsten ;
Li, Songgang ;
Yang, Huanming ;
Wang, Jian ;
Wang, Jun .
GENOME RESEARCH, 2010, 20 (02) :265-272
[8]   tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence [J].
Lowe, TM ;
Eddy, SR .
NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :955-964
[9]   Pseudoalteromonas lipolytica sp. nov., isolated from the Yangtze River estuary [J].
Xu, Xue-Wei ;
Wu, Yue-Hong ;
Wang, Chun-Sheng ;
Gao, Xiao-Hui ;
Wang, Xiao-Gu ;
Wu, Min .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 :2176-2181
[10]   Molecular analysis of the gene encoding a cold-adapted halophilic subtilase from deep-sea psychrotolerant bacterium Pseudoalteromonas sp SM9913: cloning, expression, characterization and function analysis of the C-terminal PPC domains [J].
Yan, Bing-Qiang ;
Chen, Xiu-Lan ;
Hou, Xiao-Yan ;
He, Hailun ;
Zhou, Bai-Cheng ;
Zhang, Yu-Zhong .
EXTREMOPHILES, 2009, 13 (04) :725-733
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