CONSERVATION OF BINDING-SITE SPECIFICITY OF 3 YEAST DNA-BINDING PROTEINS

被引:1
|
作者
PRETORIUS, GHJ
MULLER, HE
机构
[1] Department of Microbiology and Biochemistry, University of the Orange Free State, Bloemfontein, 9300
关键词
TRANSCRIPTION FACTOR; PROTEIN-DNA INTERACTION; MOBILITY SHIFT ASSAY;
D O I
10.1016/0014-5793(92)80057-N
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Sequence specific binding of protein extracts from 13 different yeast species to three oligonucleotide probes and two points mutants derived from Saccharomyces cerevisiae DNA binding proteins were tested using mobility shift assays. The probes were high affinity binding sites for GRF1/RAP1/ABF1 and CP1/CPF1. Most yeasts in the genus Saccharomyces showed specific binding to all three probes and also displayed similar sequence requirements when challenged by molar excesses of mutant probes. The affinities for the probes varied amongst the other yeasts tested, but in general, CPF1 binding activity was the most widespread, while the other two were more limited.
引用
收藏
页码:203 / 205
页数:3
相关论文
共 50 条
  • [1] STRUCTURE PREDICTION OF BINDING-SITE OF DNA-BINDING PROTEIN
    ZAKO, T
    UEDA, H
    SUZUKI, E
    NISHIMURA, H
    GO, M
    NAGAMUNE, T
    PROTEIN ENGINEERING, 1994, 7 (09): : 1163 - 1163
  • [2] DNA-binding specificity of the CYS3 transcription factor of Neurospora crassa defined by binding-site selection
    Paietta, John V.
    FUNGAL GENETICS AND BIOLOGY, 2008, 45 (08) : 1166 - 1171
  • [3] CLONING AND CHARACTERIZATION OF 7 HUMAN FORKHEAD PROTEINS - BINDING-SITE SPECIFICITY AND DNA BINDING
    PIERROU, S
    HELLQVIST, M
    SAMUELSSON, L
    ENERBACK, S
    CARLSSON, P
    EMBO JOURNAL, 1994, 13 (20): : 5002 - 5012
  • [4] DNA-BINDING PROTEINS PRESENT IN GUANIDINIUM ISOTHIOCYANATE LYSATES OF CELLS ARE SUITABLE FOR SPECIFIC BINDING-SITE BLOTTING
    FREYALDENHOVEN, MP
    ROYERPOKORA, B
    NAPIERSKI, I
    ROYER, HD
    NUCLEIC ACIDS RESEARCH, 1989, 17 (21) : 8891 - 8891
  • [5] REGULATORY DNA-BINDING PROTEINS IN YEAST - AN OVERVIEW
    VERDIER, JM
    YEAST, 1990, 6 (04) : 271 - 297
  • [6] DNA-BINDING BY NF-KAPPA-B/REL PROTEINS IS DIFFERENTIALLY MODULATED BY CONFORMATIONAL CONTEXT OF THE BINDING-SITE
    KUPRASH, DV
    RICE, NR
    NEDOSPASOV, SA
    JOURNAL OF CELLULAR BIOCHEMISTRY, 1995, : 39 - 39
  • [7] DETERMINANTS OF BINDING-SITE SPECIFICITY AMONG YEAST C6 ZINC CLUSTER PROTEINS
    REECE, RJ
    PTASHNE, M
    SCIENCE, 1993, 261 (5123) : 909 - 911
  • [8] Towards computional specificity screening of DNA-binding proteins
    Seeliger, Daniel
    Buelens, Floris P.
    Goette, Maik
    de Groot, Bert L.
    Grubmueller, Helmut
    NUCLEIC ACIDS RESEARCH, 2011, 39 (19) : 8281 - 8290
  • [9] SPECIFICITY OF TRANSLATIONAL REGULATION BY 2 DNA-BINDING PROTEINS
    FULFORD, W
    MODEL, P
    JOURNAL OF MOLECULAR BIOLOGY, 1984, 173 (02) : 211 - 226
  • [10] Prediction of DNA-binding specificity in zinc finger proteins
    Sumedha Roy
    Shayoni Dutta
    Kanika Khanna
    Shruti Singla
    Durai Sundar
    Journal of Biosciences, 2012, 37 : 483 - 491