Complete Genome Sequence of Mycobacterium sp. Strain 4858

被引：0

作者：

Bouam, Amar ^{[1
]}

Levasseur, Anthony ^{[1
]}

Bonnet, Maryline ^{[2
,3
]}

Borand, Laurence ^{[4
]}

Van Goethem, Charles ^{[5
]}

Drancourt, Michel ^{[1
]}

Godreuil, Sylvain ^{[6
]}

机构：

[1] Aix Marseille Univ, AP HM, IHU Mediterranee Infect, MEPHI,IRD, Marseille, France

[2] IRD, TransVIHMI UMI233, INSERM U1175, Montpellier, France

[3] Univ Montpellier, Montpellier, France

[4] Inst Pasteur Cambodge, Epidemiol & Publ Hlth, Phom Penh, Cambodia

[5] CHU Montpellier, Dept Biopathol Cellulaire & Tissulaire Tumeurs, Montpellier, France

[6] Univ Montpellier, CHU Montpellier, CNRS 5290, MIVEGEC,UMR IRD 224,Lab Bacteriol, Montpellier, France

来源：

GENOME ANNOUNCEMENTS | 2018年 / 6卷 / 07期

关键词：

D O I：

10.1128/genomeA.01604-17

中图分类号：

学科分类号：

摘要：

Mycobacterium sp. strain 4858 is a nontuberculous mycobacterium isolated from sputum in a Cambodian patient with a pulmonary infection. We report the first complete 5.6-Mbp-long genome sequence of Mycobacterium strain 4858, with 68.24% GC content, carrying 5,255 protein-coding genes, 47 tRNAs, and 3 rRNA genes.

引用

页数：2

共 13 条

[1] Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison [J].

Auch, Alexander F. ;

von Jan, Mathias ;

Klenk, Hans-Peter ;

Goeker, Markus .

STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01) :117-134

[2] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[3]

Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkh121, 10.1093/nar/gkr1065, 10.1093/nar/gkt1223, 10.1093/nar/gkp985]

[4]

Benson DA, 2013, NUCLEIC ACIDS RES, V41, pD36, DOI [10.1093/nar/gkl986, 10.1093/nar/gkt1030, 10.1093/nar/gks1195, 10.1093/nar/gkq1079, 10.1093/nar/gkp1024, 10.1093/nar/gkn723, 10.1093/nar/gkw1070, 10.1093/nar/gkr1202, 10.1093/nar/gkx1094]

[5] Toward almost closed genomes with GapFiller [J].

Boetzer, Marten ;

Pirovano, Walter .

GENOME BIOLOGY, 2012, 13 (06)

[6] Scaffolding pre-assembled contigs using SSPACE [J].

Boetzer, Marten ;

Henkel, Christiaan V. ;

Jansen, Hans J. ;

Butler, Derek ;

Pirovano, Walter .

BIOINFORMATICS, 2011, 27 (04) :578-579

[7] Rfam: an RNA family database [J].

Griffiths-Jones, S ;

Bateman, A ;

Marshall, M ;

Khanna, A ;

Eddy, SR .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :439-441

[8] Prodigal: prokaryotic gene recognition and translation initiation site identification [J].

Hyatt, Doug ;

Chen, Gwo-Liang ;

LoCascio, Philip F. ;

Land, Miriam L. ;

Larimer, Frank W. ;

Hauser, Loren J. .

BMC BIOINFORMATICS, 2010, 11

[9] RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].

Lagesen, Karin ;

Hallin, Peter ;

Rodland, Einar Andreas ;

Stærfeldt, Hans-Henrik ;

Rognes, Torbjorn ;

Ussery, David W. .

NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108

[10] ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences [J].

Laslett, D ;

Canback, B .

NUCLEIC ACIDS RESEARCH, 2004, 32 (01) :11-16

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