A GENERALIZED REACTION FIELD METHOD FOR MOLECULAR-DYNAMICS SIMULATIONS

被引:1224
|
作者
TIRONI, IG
SPERB, R
SMITH, PE
VANGUNSTEREN, WF
机构
[1] ETH ZENTRUM,INST POLYMERE,CH-8092 ZURICH,SWITZERLAND
[2] UNIV HOUSTON,DEPT CHEM,HOUSTON,TX 77204
来源
JOURNAL OF CHEMICAL PHYSICS | 1995年 / 102卷 / 13期
关键词
D O I
10.1063/1.469273
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Molecular dynamics simulations of ionic systems require the inclusion of long-range electrostatic forces. We propose an expression for the long-range electrostatic forces based on an analytical solution of the Poisson-Boltzmann equation outside a spherical cutoff, which can easily be implemented in molecular simulation programs. An analytical solution of the linearized Poisson-Boltzmann (PB) equation valid in a spherical region is obtained. From this general solution special expressions are derived for evaluating the electrostatic potential and its derivative at the origin of the sphere. These expressions have been implemented for molecular dynamics (MD) simulations, such that the surface of the cutoff sphere around a charged particle is identified with the spherical boundary of the Poisson-Boltzmann problem. The analytical solution of the Poisson-Boltzmann equation is valid for the cutoff sphere and can be used for calculating the reaction field forces on the central charge, assuming a uniform continuum of given ionic strength beyond the cutoff. MD simulations are performed for a periodic system consisting of 2127 SPC water molecules with 40 NaCl ions (1 molar). We compare the structural and dynamical results obtained from MD simulations in which the long range electrostatic interactions are treated differently; using a cutoff radius, using a cutoff radius and a Poisson-Boltzmann generalized reaction field force, and using the Ewald summation. Application of the Poisson-Boltzmann generalized reaction field gives a dramatic improvement of the structure of the solution compared to a simple cutoff treatment, at no extra computational cost. © 1995 American Institute of Physics.
引用
收藏
页码:5451 / 5459
页数:9
相关论文
共 50 条
  • [3] REACTION FIELD MOLECULAR-DYNAMICS SIMULATION WITH FRIEDMANS IMAGE CHARGE METHOD
    WANG, L
    HERMANS, J
    JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (31): : 12001 - 12007
  • [4] MOLECULAR-DYNAMICS AND QUANTUM MOLECULAR-DYNAMICS SIMULATIONS ON PARALLEL ARCHITECTURES
    VASHISHTA, P
    KALIA, RK
    NAKANO, A
    YU, J
    INTERNATIONAL JOURNAL OF MODERN PHYSICS C-PHYSICS AND COMPUTERS, 1994, 5 (02): : 281 - 283
  • [5] GENERALIZED LANGEVIN MODEL FOR MOLECULAR-DYNAMICS OF AN ACTIVATED REACTION IN SOLUTION
    BENJAMIN, I
    LEE, LL
    LI, YS
    LIU, A
    WILSON, KR
    CHEMICAL PHYSICS, 1991, 152 (1-2) : 1 - 12
  • [6] MOLECULAR-DYNAMICS SIMULATIONS OF DESORPTION
    JANSEN, APJ
    SURFACE SCIENCE, 1992, 272 (1-3) : 193 - 197
  • [7] MOLECULAR-DYNAMICS SIMULATIONS IN BIOLOGY
    KARPLUS, M
    PETSKO, GA
    NATURE, 1990, 347 (6294) : 631 - 639
  • [8] Molecular-dynamics simulations of sputtering
    Smith, R
    Kenny, SD
    Ramasawmy, D
    PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 2004, 362 (1814): : 157 - 176
  • [9] MOLECULAR-DYNAMICS SIMULATIONS OF PEPTIDES
    DAGGETT, V
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1995, 209 : 90 - COMP
  • [10] MOLECULAR-DYNAMICS SIMULATIONS OF LIQUIDS
    TALLON, JL
    COTTERILL, RMJ
    AUSTRALIAN JOURNAL OF PHYSICS, 1985, 38 (02): : 209 - 225