NEURAL NETWORKS FOR THE PEAK-PICKING OF NUCLEAR-MAGNETIC-RESONANCE SPECTRA

被引:24
作者
CARRARA, EA
PAGLIARI, F
NICOLINI, C
机构
关键词
BACK PROPAGATION; PEAK-PICKING; PATTERN MATCHING; NUCLEAR MAGNETIC RESONANCE; 2-DIMENSIONAL SPECTRA; FEEDFORWARD;
D O I
10.1016/S0893-6080(09)80012-9
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Peak-picking is the lowest-level task of the interpretation of two-dimensional, and multidimensional Nuclear Magnetic Resonance (NMR) spectra in general, for protein structure determination. It consists of individuating peaks on two-dimensional frequency spectra, for further elaboration. The performances of several feedforward artificial neural networks trained with back propagation with temperature on the task of peak-picking are compared. The best one averages less than an approximate 5% error on well-defined spectral regions. The performances of the network are comparable with those of a human expert; the consequences of this fact on the possibility of improving further the performance of the network are discussed.
引用
收藏
页码:1023 / 1032
页数:10
相关论文
共 16 条
[1]  
ABRAGAM A, 1961, PRINCIPLES NUCLEAR M
[2]  
[Anonymous], 1987, LEARNING INTERNAL RE
[3]   GRADIENT-INDUCED WATER-SUPPRESSION TECHNIQUES FOR HIGH-RESOLUTION NMR-SPECTROSCOPY [J].
BRERETON, IM ;
GALLOWAY, GJ ;
FIELD, J ;
MARSHMAN, MF ;
DODDRELL, DM .
JOURNAL OF MAGNETIC RESONANCE, 1989, 81 (02) :411-417
[4]   PEPTO - AN EXPERT SYSTEM FOR AUTOMATIC PEAK ASSIGNMENT OF 2-DIMENSIONAL NUCLEAR-MAGNETIC-RESONANCE SPECTRA OF PROTEINS [J].
CATASTI, P ;
CARRARA, E ;
NICOLINI, C .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1990, 11 (07) :805-818
[5]   COMPUTER-AIDED SEQUENTIAL ASSIGNMENT OF PROTEIN H-1-NMR SPECTRA [J].
CIESLAR, C ;
CLORE, GM ;
GRONENBORN, AM .
JOURNAL OF MAGNETIC RESONANCE, 1988, 80 (01) :119-127
[6]   AUTOMATED RECOGNITION AND ASSESSMENT OF CROSS PEAKS IN TWO-DIMENSIONAL NMR-SPECTRA OF MACROMOLECULES [J].
GLASER, S ;
KALBITZER, HR .
JOURNAL OF MAGNETIC RESONANCE, 1987, 74 (03) :450-463
[7]   CONNECTIONIST LEARNING PROCEDURES [J].
HINTON, GE .
ARTIFICIAL INTELLIGENCE, 1989, 40 (1-3) :185-234
[8]   SYMMETRY RECOGNITION APPLIED TO TWO-DIMENSIONAL NMR DATA [J].
HOCH, JC ;
HENGYI, S ;
KJAER, M ;
LUDVIGSEN, S ;
POULSEN, FM .
CARLSBERG RESEARCH COMMUNICATIONS, 1987, 52 (02) :111-122
[9]   A VERSATILE APPROACH TOWARD THE PARTIALLY AUTOMATIC RECOGNITION OF CROSS PEAKS IN 2D H-1-NMR SPECTRA [J].
KLEYWEGT, GJ ;
BOELENS, R ;
KAPTEIN, R .
JOURNAL OF MAGNETIC RESONANCE, 1990, 88 (03) :601-608
[10]  
MATHEWS BW, 1975, BIOCHIM BIOPHYS ACTA, V405, P442