De Novo Assembly of the Quorum-Sensing Pandoraea sp. Strain RB-44 Complete Genome Sequence Using PacBio Single-Molecule Real-Time Sequencing Technology

被引：6

作者：

Ee, Robson ^{[1
]}

Lim, Yan-Lue ^{[1
]}

Yin, Wai-Fong ^{[1
]}

Chan, Kok-Gan ^{[1
]}

机构：

[1] Univ Malaya, Fac Sci, Inst Biol Sci, Div Genet & Mol Biol, Kuala Lumpur, Malaysia

来源：

GENOME ANNOUNCEMENTS | 2014年 / 2卷 / 02期

关键词：

D O I：

10.1128/genomeA.00245-14

中图分类号：

学科分类号：

摘要：

We report the first complete genome sequence of Pandoraea sp. strain RB-44, which was found to possess quorum-sensing properties. To the best of our knowledge, this is the first documentation of both a complete genome sequence and quorum-sensing properties of a Pandoraea species.

引用

页数：2

共 13 条

[1] Chronic colonization with Pandoraea apista in cystic fibrosis patients determined by repetitive-element-sequence PCR [J].

Atkinson, RM ;

LiPuma, JJ ;

Rosenbluth, DB ;

Dunne, WM .

JOURNAL OF CLINICAL MICROBIOLOGY, 2006, 44 (03) :833-836

[2] Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research [J].

Conesa, A ;

Götz, S ;

García-Gómez, JM ;

Terol, J ;

Talón, M ;

Robles, M .

BIOINFORMATICS, 2005, 21 (18) :3674-3676

[3] Assignment of CDC weak oxidizer group 2 (WO-2) to the genus Pandoraea and characterization of three new Pandoraea genomospecies [J].

Daneshvar, MI ;

Hollis, DG ;

Steigerwalt, AG ;

Whitney, AM ;

Spangler, L ;

Douglas, MP ;

Jordan, JG ;

MacGregor, JP ;

Hill, BC ;

Tenover, FC ;

Brenner, DJ ;

Weyant, RS .

JOURNAL OF CLINICAL MICROBIOLOGY, 2001, 39 (05) :1819-1826

[4] Self perception in bacteria: quorum sensing with acylated homoserine lactones [J].

Fuqua, C ;

Greenberg, EP .

CURRENT OPINION IN MICROBIOLOGY, 1998, 1 (02) :183-189

[5] Census and consensus in bacterial ecosystems: The LuxR-LuxI family of quorum-sensing transcriptional regulators [J].

Fuqua, C ;

Winans, SC ;

Greenberg, EP .

ANNUAL REVIEW OF MICROBIOLOGY, 1996, 50 :727-751

[6] Quorum sensing and the cell-cell communication dependent regulation of gene expression in pathogenic and non-pathogenic bacteria [J].

Hardman, AM ;

Stewart, GSAB ;

Williams, P .

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 1998, 74 (04) :199-210

[7] Prodigal: prokaryotic gene recognition and translation initiation site identification [J].

Hyatt, Doug ;

Chen, Gwo-Liang ;

LoCascio, Philip F. ;

Land, Miriam L. ;

Larimer, Frank W. ;

Hauser, Loren J. .

BMC BIOINFORMATICS, 2010, 11

[8] Epidemic spread of Pandoraea apista, a new pathogen causing severe lung disease in cystic fibrosis patients [J].

Jorgensen, IM ;

Johansen, HK ;

Frederiksen, B ;

Pressler, T ;

Hansen, A ;

Vandamme, P ;

Hoiby, N ;

Koch, C .

PEDIATRIC PULMONOLOGY, 2003, 36 (05) :439-446

[9] RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].

Lagesen, Karin ;

Hallin, Peter ;

Rodland, Einar Andreas ;

Stærfeldt, Hans-Henrik ;

Rognes, Torbjorn ;

Ussery, David W. .

NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108

[10] ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences [J].

Laslett, D ;

Canback, B .

NUCLEIC ACIDS RESEARCH, 2004, 32 (01) :11-16

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