Genome Sequence of the Clinical Isolate Staphylococcus aureus subsp. aureus Strain UAMS-1

被引：18
作者：
Sassi, Mohamed [1 ]
Sharma, Deepak [2 ]
Brinsmade, Shaun R. [2 ]
Felden, Brice [1 ]
Augagneur, Yoann [1 ]
机构：
[1] Univ Rennes 1, INSERM, Biochim Pharmaceut, U835, Rennes, France
[2] Georgetown Univ, Dept Biol, Washington, DC 20057 USA
来源：
GENOME ANNOUNCEMENTS | 2015年 / 3卷 / 01期
关键词：
D O I：
10.1128/genomeA.01584-14
中图分类号：
学科分类号：
摘要：
We report here the draft genome sequence of Staphylococcus aureus subsp. aureus strain UAMS-1. UAMS-1 is a virulent oxacillin-susceptible clinical isolate. Its genome is composed of 2,763,963 bp and will be useful for further gene expression analysis using RNA sequencing (RNA-seq) technology.
引用
收藏
页数：2
相关论文
共 13 条
[1]   Toward an online repository of Standard Operating Procedures (SOPs) for (Meta) genomic annotation [J].
Angiuoli, Samuel V. ;
Gussman, Aaron ;
Klimke, William ;
Cochrane, Guy ;
Field, Dawn ;
Garrity, George ;
Kodira, Chinnappa D. ;
Kyrpides, Nikos ;
Madupu, Ramana ;
Markowitz, Victor ;
Tatusova, Tatiana ;
Thomson, Nick ;
White, Owen .
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 2008, 12 (02) :137-141
[2]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[3]   Toward almost closed genomes with GapFiller [J].
Boetzer, Marten ;
Pirovano, Walter .
GENOME BIOLOGY, 2012, 13 (06)
[4]   Comparative genomics of Staphylococcus aureus musculoskeletal isolates [J].
Cassat, JE ;
Dunman, PM ;
McAleese, F ;
Murphy, E ;
Projan, SJ ;
Smeltzer, MS .
JOURNAL OF BACTERIOLOGY, 2005, 187 (02) :576-592
[5]   ROLE OF THE ACCESSORY GENE REGULATOR (AGR) IN PATHOGENESIS OF STAPHYLOCOCCAL OSTEOMYELITIS [J].
GILLASPY, AF ;
HICKMON, SG ;
SKINNER, RA ;
THOMAS, JR ;
NELSON, CL ;
SMELTZER, MS .
INFECTION AND IMMUNITY, 1995, 63 (09) :3373-3380
[6]   CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats [J].
Grissa, Ibtissem ;
Vergnaud, Gilles ;
Pourcel, Christine .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W52-W57
[7]   Repair of Global Regulators in Staphylococcus aureus 8325 and Comparative Analysis with Other Clinical Isolates [J].
Herbert, Silvia ;
Ziebandt, Anne-Kathrin ;
Ohlsen, Knut ;
Schaefer, Tina ;
Hecker, Michael ;
Albrecht, Dirk ;
Novick, Richard ;
Goetz, Friedrich .
INFECTION AND IMMUNITY, 2010, 78 (06) :2877-2889
[8]   Complete genomes of two clinical Staphylococcus aureus strains:: Evidence for the rapid evolution of virulence and drug resistance [J].
Holden, MTG ;
Feil, EJ ;
Lindsay, JA ;
Peacock, SJ ;
Day, NPJ ;
Enright, MC ;
Foster, TJ ;
Moore, CE ;
Hurst, L ;
Atkin, R ;
Barron, A ;
Bason, N ;
Bentley, SD ;
Chillingworth, C ;
Chillingworth, T ;
Churcher, C ;
Clark, L ;
Corton, C ;
Cronin, A ;
Doggett, J ;
Dowd, L ;
Feltwell, T ;
Hance, Z ;
Harris, B ;
Hauser, H ;
Holroyd, S ;
Jagels, K ;
James, KD ;
Lennard, N ;
Line, A ;
Mayes, R ;
Moule, S ;
Mungall, K ;
Ormond, D ;
Quail, MA ;
Rabbinowitsch, E ;
Rutherford, K ;
Sanders, M ;
Sharp, S ;
Simmonds, M ;
Stevens, K ;
Whitehead, S ;
Barrell, BG ;
Spratt, BG ;
Parkhill, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (26) :9786-9791
[9]   RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics [J].
Lohse, Marc ;
Bolger, Anthony M. ;
Nagel, Axel ;
Fernie, Alisdair R. ;
Lunn, John E. ;
Stitt, Mark ;
Usadel, Bjoern .
NUCLEIC ACIDS RESEARCH, 2012, 40 (W1) :W622-W627
[10]   GapFiller: a de novo assembly approach to fill the gap within paired reads [J].
Nadalin, Francesca ;
Vezzi, Francesco ;
Policriti, Alberto .
BMC BIOINFORMATICS, 2012, 13
12