Genome Sequence of Sphingobium yanoikuyae B1, a Polycyclic Aromatic Hydrocarbon-Degrading Strain

被引：11
作者：
Zhao, Qiang
Hu, Hongbo [1 ]
Wang, Wei
Peng, Huasong
Zhang, Xuehong
机构：
[1] Shanghai Jiao Tong Univ, State Key Lab Microbial Metab, Shanghai, Peoples R China
来源：
GENOME ANNOUNCEMENTS | 2015年 / 3卷 / 01期
基金：
中国国家自然科学基金;
关键词：
D O I：
10.1128/genomeA.01522-14
中图分类号：
学科分类号：
摘要：
Sphingobium yanoikuyae B1 can utilize biphenyl, naphthalene, phenanthrene, toluene, and m-/p-xylene as sole sources of carbon and energy. Here, we present a 5.2-Mb assembly of its genome. An analysis of the genome can provide insights into the mechanisms of polycyclic aromatic hydrocarbon (PAH) degradation and potentially aid in bioremediation applications.
引用
收藏
页数：2
相关论文
共 18 条
[1]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[2]   Multiple site dioxygenase-catalysed cis-dihydroxylation of polycyclic azaarenes to yield a new class of bis-cis-diol metabolites [J].
Boyd, DR ;
Sharma, ND ;
Carroll, JG ;
Allen, CCR ;
Clarke, DA ;
Gibson, DT .
CHEMICAL COMMUNICATIONS, 1999, (13) :1201-1202
[3]   Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1 [J].
Chadhain, Sinead M. Ni ;
Moritz, Elizabeth M. ;
Kim, Eungbin ;
Zylstra, Gerben J. .
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, 2007, 34 (09) :605-613
[4]   Catabolic role of a three-component salicylate oxygenase from Sphingomonas yanoikuyae B1 in polycyclic aromatic hydrocarbon degradation [J].
Cho, OY ;
Choi, KY ;
Zylstra, GJ ;
Kim, YS ;
Kim, SK ;
Lee, JH ;
Sohn, HY ;
Kwon, GS ;
Kim, YM ;
Kim, E .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2005, 327 (03) :656-662
[5]   The Whole Genome Sequence of Sphingobium chlorophenolicum L-1: Insights into the Evolution of the Pentachlorophenol Degradation Pathway [J].
Copley, Shelley D. ;
Rokicki, Joseph ;
Turner, Pernilla ;
Daligault, Hajnalka ;
Nolan, Matt ;
Land, Miriam .
GENOME BIOLOGY AND EVOLUTION, 2012, 4 (02) :184-198
[6]   Effect of Sphingobium yanoikuyae B1 inoculation on bacterial community dynamics and polycyclic aromatic hydrocarbon degradation in aged and freshly PAH-contaminated soils [J].
Cunliffe, Michael ;
Kertesz, Michael A. .
ENVIRONMENTAL POLLUTION, 2006, 144 (01) :228-237
[7]   Identifying bacterial genes and endosymbiont DNA with Glimmer [J].
Delcher, Arthur L. ;
Bratke, Kirsten A. ;
Powers, Edwin C. ;
Salzberg, Steven L. .
BIOINFORMATICS, 2007, 23 (06) :673-679
[8]   KEGG-PATH: Kyoto encyclopedia of genes and genomes-based pathway analysis using a path analysis model [J].
Du, Junli ;
Yuan, Zhifa ;
Ma, Ziwei ;
Song, Jiuzhou ;
Xie, Xiaoli ;
Chen, Yulin .
MOLECULAR BIOSYSTEMS, 2014, 10 (09) :2441-2447
[9]   Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae BI [J].
Ferraro, Daniel J. ;
Brown, Eric N. ;
Yu, Chi-Li ;
Parales, Rebecca E. ;
Gibson, David T. ;
Ramaswamy, S. .
BMC STRUCTURAL BIOLOGY, 2007, 7
[10]   OXIDATION OF CARCINOGENS BENZO[A]PYRENE AND BENZO[A]ANTHRACENE TO DIHYDRODIOLS BY A BACTERIUM [J].
GIBSON, DT ;
MAHADEVAN, V ;
JERINA, DM ;
YAGI, H ;
YEH, HJC .
SCIENCE, 1975, 189 (4199) :295-297
12