Crystal structure of 8-(4-methylphenyl)-2 '-deoxyadenosine hemihydrate

被引:1
作者
Ardhapure, Ajaykumar V. [1 ]
Sanghvi, Yogesh S. [2 ]
Borozdina, Yulia [3 ]
Kapdi, Anant Ramakant
Schulzke, Carola [4 ]
机构
[1] Inst Chem Technol, Dept Chem, Nathalal Parekh Rd, Bombay 400019, Maharashtra, India
[2] Rasayan Inc, 2802 Crystal Ridge Rd, Encinitas, CA 92024 USA
[3] Max Planck Inst Biol Cybernet, Spemannstr 41, D-72076 Tubingen, Germany
[4] Ernst Moritz Arndt Univ Greifswald, Inst Biochem, Felix Hausdorff Str 4, D-17487 Greifswald, Germany
来源
ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS | 2018年 / 74卷
基金
欧洲研究理事会;
关键词
crystal structure; adenosine; nucleoside; palladium; catalysis; Suzuki-Miyaura cross-coupling;
D O I
10.1107/S2056989017017212
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
In the asymmetric unit, equalling the unit cell (triclinic, P1, Z = 1), two molecules of the title compound, 8-(4-methylphenyl)-d-2'-deoxyadenosine, C17H19N5O3, are present, with distinct conformations of the two sugar moieties, together with one solvent water molecule. All three ribose O atoms are involved in hydrogen bonding and the crystal packing is largely determined by hydrogen-bonding or hydrogen-heteroatom interactions (O-H center dot center dot center dot O, O-H center dot center dot center dot N, N-H center dot center dot center dot O, C-H center dot center dot center dot O and C-H center dot center dot center dot N) with one independent molecule directly linked to four neighbouring molecules and the other molecule directly linked to six neighbouring molecules. The two independent molecules of the asymmetric unit display three weak intramolecular C-H-to-heteroatom contacts, two of which are very similar despite the different conformations of the deoxyribosyl moieties. The aromatic ring systems of both molecules are in proximity to each other and somehow aligned, though not coplanar. The absolute structures of the two molecules were assumed with reference to the reactant 8-bromo-D-2'-deoxyadenosine as they could not be determined crystallographically.
引用
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页码:1 / +
页数:12
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