Sequences of Zika Virus Genomes from a Pediatric Cohort in Nicaragua

被引：0

作者：

Oldfield, Lauren M. ^{[1
]}

Fedorova, Nadia ^{[1
]}

Puri, Vinita ^{[1
,7
]}

Shrivastava, Susmita ^{[1
]}

Amedeo, Paolo ^{[1
]}

Durbin, Alan ^{[2
]}

Rocchi, Iara ^{[2
]}

Williams, Torrey ^{[2
]}

Shabman, Reed S. ^{[1
,8
]}

Tan, Gene S. ^{[2
]}

Balmaseda, Angel ^{[3
]}

Kuan, Guillermina ^{[4
]}

Saborio, Saira ^{[3
]}

Gordon, Aubree ^{[5
]}

Harris, Eva ^{[6
]}

Pickett, Brett E. ^{[1
]}

机构：

[1] J Craig Venter Inst, Rockville, MD 20850 USA

[2] J Craig Venter Inst, La Jolla, CA USA

[3] Minist Hlth, Ctr Nacl Diagnost & Referencia, Lab Nacl Virol, Managua, Nicaragua

[4] Minist Hlth, Ctr Salud Socrates Flores Vivas, Managua, Nicaragua

[5] Univ Michigan, Sch Publ Hlth, Dept Epidemiol, Ann Arbor, MI 48109 USA

[6] Univ Calif Berkeley, Sch Publ Hlth, Div Infect Dis & Vaccinol, Berkeley, CA 94720 USA

[7] GlaxoSmithKline, Rockville, MD USA

[8] Amer Type Culture Collect, Gaithersburg, MD USA

来源：

GENOME ANNOUNCEMENTS | 2018年 / 6卷 / 24期

基金：

美国国家卫生研究院;

关键词：

D O I：

10.1128/genomeA.00498-18

中图分类号：

学科分类号：

摘要：

We report here the whole-genome sequence of 11 Zika virus (ZIKV) samples from six pediatric patients in Nicaragua. Serum samples were collected, and ZIKV was isolated in tissue culture. Both serum and virus isolates were sequenced. The consensus ZIKV genomes are greater than 99% identical to each other.

引用

页数：2

共 6 条

[1] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[2] Zika Virus Outbreak, Bahia, Brazil
Campos, Gubio S.
Bandeira, Antonio C.
Sardi, Silvia I.
[J]. EMERGING INFECTIOUS DISEASES, 2015, 21 (10) : 1885 - 1886
[3] Viral genome sequencing by random priming methods
Djikeng, Appolinaire
Halpin, Rebecca
Kuzmickas, Ryan
DePasse, Jay
Feldblyum, Jeremy
Sengamalay, Naomi
Afonso, Claudio
Zhang, Xinsheng
Anderson, Norman G.
Ghedin, Elodie
Spiro, David J.
[J]. BMC GENOMICS, 2008, 9 (1)
[4] Zika Virus Outbreak on Yap Island, Federated States of Micronesia
Duffy, Mark R.
Chen, Tai-Ho
Hancock, W. Thane
Powers, Ann M.
Kool, Jacob L.
Lanciotti, Robert S.
Pretrick, Moses
Marfel, Maria
Holzbauer, Stacey
Dubray, Christine
Guillaumot, Laurent
Griggs, Anne
Bel, Martin
Lambert, Amy J.
Laven, Janeen
Kosoy, Olga
Panella, Amanda
Biggerstaff, Brad J.
Fischer, Marc
Hayes, Edward B.
[J]. NEW ENGLAND JOURNAL OF MEDICINE, 2009, 360 (24) : 2536 - 2543
[5] A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses
Moser, Lindsey A.
Ramirez-Carvajal, Lisbeth
Puri, Vinita
Pauszek, Steven J.
Matthews, Krystal
Dilley, Kari A.
Mullan, Clancy
McGraw, Jennifer
Khayat, Michael
Beeri, Karen
Yee, Anthony
Dugan, Vivien
Heise, Mark T.
Frieman, Matthew B.
Rodriguez, Luis L.
Bernard, Kristen A.
Wentworth, David E.
Stockwell, Timothy B.
Shabman, Reed S.
[J]. MSYSTEMS, 2016, 1 (03)
[6] VIGOR extended to annotate genomes for additional 12 different viruses
Wang, Shiliang
Sundaram, Jaideep P.
Stockwell, Timothy B.
[J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (W1) : W186 - W192

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