PERVASIVE CPG SUPPRESSION IN ANIMAL MITOCHONDRIAL GENOMES

被引:203
作者
CARDON, LR [1 ]
BURGE, C [1 ]
CLAYTON, DA [1 ]
KARLIN, S [1 ]
机构
[1] STANFORD UNIV,SCH MED,DEPT DEV BIOL,STANFORD,CA 94035
关键词
D O I
10.1073/pnas.91.9.3799
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
All available complete mitochondrial genomes (21 species) are evaluated for dinucleotide over- and under-representation. The CpG dinucleotide is pervasively under-represented in all animal mitochondria, but it is of variable relative abundance in fungal, protist, and plant mitochondrial genomes. Interpretations and hypotheses are considered relative to mitochondrial genome organization, methylation, structural specificities, directed mutation, and evolutionary events. In particular, our results support Mycoplasma capricolum or a close relative as the most likely bacterial ancestor of the mitochondria.
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页码:3799 / 3803
页数:5
相关论文
共 24 条
[1]   CODON RECOGNITION PATTERNS AS DEDUCED FROM SEQUENCES OF THE COMPLETE SET OF TRANSFER-RNA SPECIES IN MYCOPLASMA-CAPRICOLUM - RESEMBLANCE TO MITOCHONDRIA [J].
ANDACHI, Y ;
YAMAO, F ;
MUTO, A ;
OSAWA, S .
JOURNAL OF MOLECULAR BIOLOGY, 1989, 209 (01) :37-54
[2]   EVOLUTION OF THE GENOME AND THE GENETIC-CODE - SELECTION AT THE DINUCLEOTIDE LEVEL BY METHYLATION AND POLYRIBONUCLEOTIDE CLEAVAGE [J].
BEUTLER, E ;
GELBART, T ;
HAN, JH ;
KOZIOL, JA ;
BEUTLER, B .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1989, 86 (01) :192-196
[3]   PREDICTING DNA DUPLEX STABILITY FROM THE BASE SEQUENCE [J].
BRESLAUER, KJ ;
FRANK, R ;
BLOCKER, H ;
MARKY, LA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (11) :3746-3750
[4]   OVER-REPRESENTATION AND UNDER-REPRESENTATION OF SHORT OLIGONUCLEOTIDES IN DNA-SEQUENCES [J].
BURGE, C ;
CAMPBELL, AM ;
KARLIN, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (04) :1358-1362
[5]   REPLICATION OF ANIMAL MITOCHONDRIAL-DNA [J].
CLAYTON, DA .
CELL, 1982, 28 (04) :693-705
[6]  
DAWID IB, 1974, SCIENCE, V184, P80, DOI 10.1126/science.184.4132.80
[7]  
DELCOURT SG, 1991, J BIOL CHEM, V266, P15160
[8]  
Feinberg SE, 1975, DISCRETE MULTIVARIAT
[9]   THE ENDOSYMBIONT HYPOTHESIS REVISITED [J].
GRAY, MW .
INTERNATIONAL REVIEW OF CYTOLOGY-A SURVEY OF CELL BIOLOGY, 1992, 141 :233-357
[10]   MITOCHONDRIAL-DNA FROM VARIOUS ORGANISMS DOES NOT CONTAIN INTERNALLY METHYLATED CYTOSINE IN -CCGG- SEQUENCES [J].
GROOT, GSP ;
KROON, AM .
BIOCHIMICA ET BIOPHYSICA ACTA, 1979, 564 (02) :355-357