LONG-TIME SCALE MOLECULAR-DYNAMICS SUBSPACE INTEGRATION METHOD APPLIED TO ANHARMONIC CRYSTALS AND GLASSES

被引:34
|
作者
SPACE, B [1 ]
RABITZ, H [1 ]
ASKAR, A [1 ]
机构
[1] KOC UNIV, DEPT MATH, ISTINYE 80860, TURKEY
来源
JOURNAL OF CHEMICAL PHYSICS | 1993年 / 99卷 / 11期
关键词
D O I
10.1063/1.465573
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A subspace dynamics method is presented to model long time dynamical events. The method involves determining a set of vectors that span the subspace of the long time dynamics. Specifically, the vectors correspond to real and imaginary low frequency normal modes of the condensed phase system. Most importantly, the normal mode derived vectors are only used to define the subspace of low frequency motions, and the actual time dependent dynamics is fully anharmonic. The resultant projected set of Newton's equations is numerically solved for the subspace motions. Displacements along the coordinates outside the subspace are then constrained during the integration of the equations of motion in the reduced dimensional space. The method is different from traditional constraint methods in that it can systematically deduce and remove both local and collective high frequency motions of the condensed phase system with no a priori assumptions. The technique is well suited to removing large numbers of degrees of freedom, while only keeping the very low frequency global motions. The method is applied to highly anharmonic Lennard-Jones crystal and glass systems. Even in these systems with no intramolecular degrees of freedom or obvious separation of time scales, the subspace dynamics provides a speed up of approximately a factor of 5 over traditional molecular dynamics through use of a larger integration time step. In the cases illustrated here a single set of subspace vectors was adequate over the full time interval, although this is not expected to be true for all systems.
引用
收藏
页码:9070 / 9079
页数:10
相关论文
共 50 条
  • [31] PARALLELIZATION OF AN IMPLICIT RUNGE-KUTTA METHOD FOR MOLECULAR-DYNAMICS INTEGRATION
    JANEZIC, D
    TROBEC, R
    JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1994, 34 (03): : 641 - 646
  • [32] POLYMORPHIC TRANSITIONS IN SINGLE-CRYSTALS - A NEW MOLECULAR-DYNAMICS METHOD
    PARRINELLO, M
    RAHMAN, A
    JOURNAL OF APPLIED PHYSICS, 1981, 52 (12) : 7182 - 7190
  • [33] A Novel Long-Time Coherent Integration Method for Moving Target Detection
    Bai X.
    Wang Y.
    Zhao J.
    Tao R.
    Bai, Xia (bai@bit.edu.cn), 2021, Beijing Institute of Technology (30): : 340 - 351
  • [34] Long-time coherent integration targets detection method for ubiquitous radar
    Zhang, Yue
    Zou, Jiang-Wei
    Chen, Zeng-Ping
    Guofang Keji Daxue Xuebao/Journal of National University of Defense Technology, 2010, 32 (06): : 15 - 20
  • [35] A trigonometrically-fitted method for long-time integration of orbital problems
    Simos, TE
    MATHEMATICAL AND COMPUTER MODELLING, 2004, 40 (11-12) : 1263 - 1272
  • [36] Long-time protein folding dynamics from short-time molecular dynamics simulations
    Chodera, John D.
    Swope, William C.
    Pitera, Jed W.
    Dill, Ken A.
    MULTISCALE MODELING & SIMULATION, 2006, 5 (04): : 1214 - 1226
  • [37] A Modified Precise Integration Method for Long-Time Duration Dynamic Analysis
    Huang, Ce
    Fu, Minghui
    MATHEMATICAL PROBLEMS IN ENGINEERING, 2018, 2018
  • [38] A Novel Long-Time Coherent Integration Method for Moving Target Detection
    Xia Bai
    Yan Wang
    Juan Zhao
    Ran Tao
    Journal of Beijing Institute of Technology, 2021, 30 (04) : 340 - 351
  • [39] MULTI-TIME SCALE ANALYSIS APPLIED TO LONG-TIME SIMULATION OF POWER-SYSTEMS
    RAO, KR
    JENKINS, L
    PARTHASARATHY, K
    BALASUBRAMANIAN, R
    INTERNATIONAL JOURNAL OF ELECTRICAL POWER & ENERGY SYSTEMS, 1985, 7 (01) : 7 - 12
  • [40] MOLECULAR-DYNAMICS SIMULATION OF PARVALBUMIN WITH A MULTIPLE TIME STEP METHOD
    TELEMAN, O
    AHLSTROM, P
    JONSSON, B
    BIOPHYSICAL JOURNAL, 1985, 47 (02) : A399 - A399