ON FINDING ALL SUBOPTIMAL FOLDINGS OF AN RNA MOLECULE

被引:1677
作者
ZUKER, M [1 ]
机构
[1] NATL RES COUNCIL CANADA, DIV BIOL SCI, PROT LAB, BIOMOLEC MODELING SECT, OTTAWA K1A 0R6, ONTARIO, CANADA
关键词
D O I
10.1126/science.2468181
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
引用
收藏
页码:48 / 52
页数:5
相关论文
共 31 条
[11]   3-DIMENSIONAL TERTIARY STRUCTURE OF YEAST PHENYLALANINE TRANSFER-RNA [J].
KIM, SH ;
SUDDATH, FL ;
QUIGLEY, GJ ;
MCPHERSON, A ;
SUSSMAN, JL ;
WANG, AHJ ;
SEEMAN, NC ;
RICH, A .
SCIENCE, 1974, 185 (4149) :435-440
[12]   SELF-SPLICING RNA - AUTO-EXCISION AND AUTO-CYCLIZATION OF THE RIBOSOMAL-RNA INTERVENING SEQUENCE OF TETRAHYMENA [J].
KRUGER, K ;
GRABOWSKI, PJ ;
ZAUG, AJ ;
SANDS, J ;
GOTTSCHLING, DE ;
CECH, TR .
CELL, 1982, 31 (01) :147-157
[13]   SEQUENCE COMPARISON OF THE RDNA INTRONS FROM 6 DIFFERENT SPECIES OF TETRAHYMENA [J].
NIELSEN, H ;
ENGBERG, J .
NUCLEIC ACIDS RESEARCH, 1985, 13 (20) :7445-7455
[14]   FAST ALGORITHM FOR PREDICTING THE SECONDARY STRUCTURE OF SINGLE-STRANDED RNA [J].
NUSSINOV, R ;
JACOBSON, AB .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1980, 77 (11) :6309-6313
[15]   ALGORITHMS FOR LOOP MATCHINGS [J].
NUSSINOV, R ;
PIECZENIK, G ;
GRIGGS, JR ;
KLEITMAN, DJ .
SIAM JOURNAL ON APPLIED MATHEMATICS, 1978, 35 (01) :68-82
[16]   AN ENERGY-MODEL THAT PREDICTS THE CORRECT FOLDING OF BOTH THE TRANSFER-RNA AND THE 5S RNA MOLECULES [J].
PAPANICOLAOU, C ;
GOUY, M ;
NINIO, J .
NUCLEIC ACIDS RESEARCH, 1984, 12 (01) :31-44
[17]   METHOD FOR PREDICTING RNA SECONDARY STRUCTURE [J].
PIPAS, JM ;
MCMAHON, JE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1975, 72 (06) :2017-2021
[18]   A NEW PRINCIPLE OF RNA FOLDING BASED ON PSEUDOKNOTTING [J].
PLEIJ, CWA ;
RIETVELD, K ;
BOSCH, L .
NUCLEIC ACIDS RESEARCH, 1985, 13 (05) :1717-1731
[19]   A PSEUDOKNOTTED RNA OLIGONUCLEOTIDE [J].
PUGLISI, JD ;
WYATT, JR ;
TINOCO, I .
NATURE, 1988, 331 (6153) :283-286
[20]   DYNAMICS AND INTERACTIONS OF VIROIDS [J].
RIESNER, D ;
COLPAN, M ;
GOODMAN, TC ;
NAGEL, L ;
SCHUMACHER, J ;
STEGER, G ;
HOFMANN, H .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1983, 1 (03) :669-688