Assessing the potential of next generation sequencing technologies for missing persons identification efforts
被引:13
|
作者:
Irwin, Jodi
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机构:
Armed Forces Med Examiner Syst, Armed Forces DNA Identificat Lab, 1413 Res Blvd, Rockville, MD 20850 USAArmed Forces Med Examiner Syst, Armed Forces DNA Identificat Lab, 1413 Res Blvd, Rockville, MD 20850 USA
Irwin, Jodi
[1
]
Just, Rebecca
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机构:
Armed Forces Med Examiner Syst, Armed Forces DNA Identificat Lab, 1413 Res Blvd, Rockville, MD 20850 USAArmed Forces Med Examiner Syst, Armed Forces DNA Identificat Lab, 1413 Res Blvd, Rockville, MD 20850 USA
Just, Rebecca
[1
]
Scheible, Melissa
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机构:
Armed Forces Med Examiner Syst, Armed Forces DNA Identificat Lab, 1413 Res Blvd, Rockville, MD 20850 USAArmed Forces Med Examiner Syst, Armed Forces DNA Identificat Lab, 1413 Res Blvd, Rockville, MD 20850 USA
Scheible, Melissa
[1
]
Loreille, Odile
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机构:
Armed Forces Med Examiner Syst, Armed Forces DNA Identificat Lab, 1413 Res Blvd, Rockville, MD 20850 USAArmed Forces Med Examiner Syst, Armed Forces DNA Identificat Lab, 1413 Res Blvd, Rockville, MD 20850 USA
Loreille, Odile
[1
]
机构:
[1] Armed Forces Med Examiner Syst, Armed Forces DNA Identificat Lab, 1413 Res Blvd, Rockville, MD 20850 USA
Next generation sequencing;
Missing person;
STR;
Mitochondrial DNA;
Target enrichment;
D O I:
10.1016/j.fsigss.2011.09.085
中图分类号:
Q3 [遗传学];
学科分类号:
071007 ;
090102 ;
摘要:
To assess the utility of next generation sequencing (NGS) technologies for missing persons applications, we have recently initiated a study of various platforms and target enrichment strategies for sample types regularly encountered in our large-scale identification efforts. Specific laboratory workflows based on target marker enrichment and NGS platform are being considered for different sample types, and the overall effort is being undertaken with a strong emphasis on both raw data and final consensus sequence quality. The current study is first and foremost a general evaluation of these data and technologies from the standpoint of forensic application, yet the strategy we are pursuing is ultimately intended to facilitate NGS integration into standard casework laboratories. We are, therefore, evaluating NGS workflows and data for the typical nuclear and mitochondrial DNA markers used in forensics, while still allowing for future work that may take greater advantage of the strengths of these technologies. Here, we present an overview of our NGS strategy. Published by Elsevier Ireland Ltd.
机构:
Univ Calif San Francisco, UCSF Helen Diller Family Comprehens Canc Ctr, UCSF Ctr Translat & Policy Res Personalized Med T, UCSF Philip R Lee Inst Hlth Policy,Dept Clin Phar, San Francisco, CA 94143 USAUniv Calif San Francisco, UCSF Helen Diller Family Comprehens Canc Ctr, UCSF Ctr Translat & Policy Res Personalized Med T, UCSF Philip R Lee Inst Hlth Policy,Dept Clin Phar, San Francisco, CA 94143 USA
机构:
Cold Spring Harbor Lab, Genome Ctr, Woodbury, NY 11797 USACold Spring Harbor Lab, Genome Ctr, Woodbury, NY 11797 USA
McCombie, W. Richard
McPherson, John D.
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机构:
Univ Calif Davis, Dept Biochem & Mol Med, Comprehens Canc Ctr, Sacramento, CA 95817 USACold Spring Harbor Lab, Genome Ctr, Woodbury, NY 11797 USA
McPherson, John D.
Mardis, Elaine R.
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机构:
Ohio State Univ, Coll Med, Nationwide Childrens Hosp, Inst Genom Med, Columbus, OH 43205 USACold Spring Harbor Lab, Genome Ctr, Woodbury, NY 11797 USA
Mardis, Elaine R.
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE,
2019,
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