Frequent and Discriminative Subnetwork Mining for Mild Cognitive Impairment Classification

被引:27
作者
Fei, Fei [1 ]
Jie, Biao [1 ]
Zhang, Daoqiang [1 ]
机构
[1] Nanjing Univ Aeronaut & Astronaut, Coll Comp Sci & Technol, 29 Yudao St, Nanjing 210016, Jiangsu, Peoples R China
关键词
functional connectivity network; graph kernel; mild cognitive impairment; subgraph mining;
D O I
10.1089/brain.2013.0214
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Recent studies on brain networks have suggested that many brain diseases, such as Alzheimer's disease and mild cognitive impairment (MCI), are related to a large-scale brain network, rather than individual brain regions. However, it is challenging to find such a network from the whole brain network due to the complexity of brain networks. In this article, the authors propose a novel method to mine the discriminative subnetworks for classifying MCI patients from healthy controls (HC). Specifically, the authors first extract a set of frequent subnetworks from each of the two groups (i.e., MCI and HC), respectively. Then, measure the discriminative ability of those frequent subnetworks using the graph kernel-based classification method and select the most discriminative subnetworks for subsequent classification. The results on the functional connectivity networks of 12 MCI and 25 HC show that this method can obtain competitive results compared with state-of-the-art methods on MCI classification.
引用
收藏
页码:347 / 360
页数:14
相关论文
共 76 条
[1]   Fractal connectivity of long-memory networks [J].
Achard, Sophie ;
Bassett, Danielle S. ;
Meyer-Lindenberg, Andreas ;
Bullmore, Edward T. .
PHYSICAL REVIEW E, 2008, 77 (03)
[2]   A shortest-path graph kernel for estimating gene product semantic similarity [J].
Alvarez, Marco A. ;
Qi, Xiaojun ;
Yan, Changhui .
JOURNAL OF BIOMEDICAL SEMANTICS, 2011, 2
[3]   Topologically Convergent and Divergent Structural Connectivity Patterns between Patients with Remitted Geriatric Depression and Amnestic Mild Cognitive Impairment [J].
Bai, Feng ;
Shu, Ni ;
Yuan, Yonggui ;
Shi, Yongmei ;
Yu, Hui ;
Wu, Di ;
Wang, Jinhui ;
Xia, Mingrui ;
He, Yong ;
Zhang, Zhijun .
JOURNAL OF NEUROSCIENCE, 2012, 32 (12) :4307-4318
[4]   Evolution in the conceptualization of dementia and Alzheimer's disease: Greco-Roman period to the 1960s [J].
Berchtold, NC ;
Cotman, CW .
NEUROBIOLOGY OF AGING, 1998, 19 (03) :173-189
[5]   Mining molecular fragments: Finding relevant substructures of molecules [J].
Borgelt, C ;
Berthold, MR .
2002 IEEE INTERNATIONAL CONFERENCE ON DATA MINING, PROCEEDINGS, 2002, :51-58
[6]   Protein function prediction via graph kernels [J].
Borgwardt, KM ;
Ong, CS ;
Schönauer, S ;
Vishwanathan, SVN ;
Smola, AJ ;
Kriegel, HP .
BIOINFORMATICS, 2005, 21 :I47-I56
[7]   Forecasting the global burden of Alzheimer's disease [J].
Brookmeyer, Ron ;
Johnson, Elizabeth ;
Ziegler-Graham, Kathryn ;
Arrighi, H. Michael .
ALZHEIMERS & DEMENTIA, 2007, 3 (03) :186-191
[8]   A voxel-based morphometry study of temporal lobe gray matter reductions in Alzheimer's disease [J].
Busatto, GF ;
Garrido, GEJ ;
Almeida, OP ;
Castro, CC ;
Camargo, CHP ;
Cid, CG ;
Buchpiguel, CA ;
Furuie, S ;
Bottino, CM .
NEUROBIOLOGY OF AGING, 2003, 24 (02) :221-231
[9]   Classification of Alzheimer Disease, Mild Cognitive Impairment, and Normal Cognitive Status with Large-Scale Network Analysis Based on Resting-State Functional MR Imaging [J].
Chen, Gang ;
Ward, B. Douglas ;
Xie, Chunming ;
Li, Wenjun ;
Wu, Zhilin ;
Jones, Jennifer L. ;
Franczak, Malgorzata ;
Antuono, Piero ;
Li, Shi-Jiang .
RADIOLOGY, 2011, 259 (01) :213-221
[10]  
Cordes D, 2001, AM J NEURORADIOL, V22, P1326