DNA STRIDER - AN INEXPENSIVE SEQUENCE-ANALYSIS PACKAGE FOR THE MACINTOSH

被引:31
作者
DOUGLAS, SE [1 ]
机构
[1] NATL RES COUNCIL CANADA,ATLANTIC REG LAB,INST MARINE BIOSCI,HALIFAX,NS B3H 3Z1,CANADA
关键词
RESTRICTION MAP; AMINO ACID USAGE; HYDROPATHY PLOT; TRANSLATION; OPEN READING FRAME;
D O I
10.1007/BF02821333
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
DNA Strider is a user-friendly Macintosh program designed for analysis Of molecular sequence data. The program shows great versatility in choice:of genetic codes, restriction, enzymes, algorithms for hydropathy plots, and interconversions between types of sequence data. It is very straightforward and interacts well with Other sequence and phylogenetic analysis packages, importing;:and exporting:data : easily. The graphic outputs can be used directly for manuscript-quality figures, or exported to more sophisticated:text or graphic programs.
引用
收藏
页码:37 / 45
页数:9
相关论文
共 9 条
[1]  
EISENBERG D, 1984, P NATL ACAD SCI USA, V157, P140
[2]   PREDICTION OF PROTEIN ANTIGENIC DETERMINANTS FROM AMINO-ACID-SEQUENCES [J].
HOPP, TP ;
WOODS, KR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1981, 78 (06) :3824-3828
[3]   A SIMPLE METHOD FOR DISPLAYING THE HYDROPATHIC CHARACTER OF A PROTEIN [J].
KYTE, J ;
DOOLITTLE, RF .
JOURNAL OF MOLECULAR BIOLOGY, 1982, 157 (01) :105-132
[4]  
MADDISON W, 1987, MCCLADE VERSION 2 1, P55
[6]   IMPROVED TOOLS FOR BIOLOGICAL SEQUENCE COMPARISON [J].
PEARSON, WR ;
LIPMAN, DJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (08) :2444-2448
[7]   THE CODON ADAPTATION INDEX - A MEASURE OF DIRECTIONAL SYNONYMOUS CODON USAGE BIAS, AND ITS POTENTIAL APPLICATIONS [J].
SHARP, PM ;
LI, WH .
NUCLEIC ACIDS RESEARCH, 1987, 15 (03) :1281-1295
[8]  
SHORTRIDGE RD, 1986, COMPUT APPL BIOSCI, V2, P13
[9]  
SWOFFORD DL, 1990, PAUP VERSION 3 0, P136