DE-NOVO DESIGN OF ENZYME-INHIBITORS BY MONTE-CARLO LIGAND GENERATION

被引:79
作者
GEHLHAAR, DK
MOERDER, KE
ZICHI, D
SHERMAN, CJ
OGDEN, RC
FREER, ST
机构
[1] AGOURON PHARMACEUT INC, SAN DIEGO, CA 92121 USA
[2] TORREY SCI & TECHNOL INC, SAN DIEGO, CA 92121 USA
[3] NEXAGEN INC, BOULDER, CO 80301 USA
关键词
D O I
10.1021/jm00003a010
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
A new computational method for the in situ generation of small molecules within the binding site of a protein is described. The method has been evaluated using two well-studied systems, dihydrofolate reductase and thymidylate synthase. The method has also been used to guide improvements to inhibitors of HIV-1 protease. One such improvement resulted in a compound selected for preclinical studies as an antiviral agent against AIDS.
引用
收藏
页码:466 / 472
页数:7
相关论文
共 28 条
[1]   DESIGN OF ENZYME-INHIBITORS USING ITERATIVE PROTEIN CRYSTALLOGRAPHIC ANALYSIS [J].
APPELT, K ;
BACQUET, RJ ;
BARTLETT, CA ;
BOOTH, CLJ ;
FREER, ST ;
FUHRY, MAM ;
GEHRING, MR ;
HERRMANN, SM ;
HOWLAND, EF ;
JANSON, CA ;
JONES, TR ;
KAN, CC ;
KATHARDEKAR, V ;
LEWIS, KK ;
MARZONI, GP ;
MATTHEWS, DA ;
MOHR, C ;
MOOMAW, EW ;
MORSE, CA ;
OATLEY, SJ ;
OGDEN, RC ;
REDDY, MR ;
REICH, SH ;
SCHOETTLIN, WS ;
SMITH, WW ;
VARNEY, MD ;
VILLAFRANCA, JE ;
WARD, RW ;
WEBBER, S ;
WEBBER, SE ;
WELSH, KM ;
WHITE, J .
JOURNAL OF MEDICINAL CHEMISTRY, 1991, 34 (07) :1925-1934
[2]  
Bartlett PA, 1989, MOL RECOGNITION CHEM, V78, P182
[3]   THE COMPUTER-PROGRAM LUDI - A NEW METHOD FOR THE DENOVO DESIGN OF ENZYME-INHIBITORS [J].
BOHM, HJ .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1992, 6 (01) :61-78
[4]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[5]   MASS RECEPTOR SCREENING FOR NEW DRUGS [J].
BURCH, RM ;
KYLE, DJ .
PHARMACEUTICAL RESEARCH, 1991, 8 (02) :141-147
[6]   COMPUTATION OF MOLECULAR VOLUME [J].
CONNOLLY, ML .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1985, 107 (05) :1118-1124
[7]   ANALYTICAL MOLECULAR-SURFACE CALCULATION [J].
CONNOLLY, ML .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1983, 16 (OCT) :548-558
[8]  
ERICKSON JW, 1992, ANNU REP MED CHEM, V27, P271
[10]  
HUMBLET C, 1993, ANNU REP MED CHEM, V28, P275