Recent Advances in Cellular Glycomic Analyses

被引:24
作者
Furukawa, Jun-ichi [1 ,2 ]
Fujitani, Naoki [1 ,2 ]
Shinohara, Yasuro [1 ,2 ]
机构
[1] Hokkaido Univ, Grad Sch Adv Life Sci, Lab Med & Funct Glyc, Sapporo, Hokkaido 0010021, Japan
[2] Hokkaido Univ, Frontier Res Ctr Post Genome Sci & Technol, Sapporo, Hokkaido 0010021, Japan
关键词
cellular glycomics; N-glycans; O-glycans; glycosphingolipids; mass spectrometry; glycosaminoglycans; sample preparation;
D O I
10.3390/biom3010198
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A large variety of glycans is intricately located on the cell surface, and the overall profile (the glycome, given the entire repertoire of glycoconjugate-associated sugars in cells and tissues) is believed to be crucial for the diverse roles of glycans, which are mediated by specific interactions that control cell-cell adhesion, immune response, microbial pathogenesis and other cellular events. The glycomic profile also reflects cellular alterations, such as development, differentiation and cancerous change. A glycoconjugate-based approach would therefore be expected to streamline discovery of novel cellular biomarkers. Development of such an approach has proven challenging, due to the technical difficulties associated with the analysis of various types of cellular glycomes; however, recent progress in the development of analytical methodologies and strategies has begun to clarify the cellular glycomics of various classes of glycoconjugates. This review focuses on recent advances in the technical aspects of cellular glycomic analyses of major classes of glycoconjugates, including N- and O-linked glycans, derived from glycoproteins, proteoglycans and glycosphingolipids. Articles that unveil the glycomics of various biologically important cells, including embryonic and somatic stem cells, induced pluripotent stem (iPS) cells and cancer cells, are discussed.
引用
收藏
页码:198 / 225
页数:28
相关论文
共 164 条
[21]   Reprint of: Chip-based nanoelectrospray mass spectrometry of brain gangliosides [J].
Flangea, Corina ;
Serb, Alina ;
Sisu, Eugen ;
Zamfir, Alina D. .
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS, 2011, 1811 (11) :897-917
[22]  
Freeze HH, 2006, NAT REV GENET, V7, P537, DOI 10.1038/nrg1894
[23]   Qualitative and Quantitative Cellular Glycomics of Glycosphingolipids Based on Rhodococcal Endoglycosylceramidase-assisted Glycan Cleavage, Glycoblotting-assisted Sample Preparation, and Matrix-assisted Laser Desorption Ionization Tandem Time-of-flight Mass Spectrometry Analysis [J].
Fujitani, Naoki ;
Takegawa, Yasuhiro ;
Ishibashr, Yohei ;
Araki, Kayo ;
Furukawa, Jun-ichi ;
Mitsutake, Susumu ;
Igarashi, Yasuyuki ;
Ito, Makoto ;
Shinohara, Yasuro .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2011, 286 (48) :41669-41679
[24]   Comprehensive approach to structural and functional glycomics based on chemoselective glycoblotting and sequential tag conversion [J].
Furukawa, Jun-ichi ;
Shinohara, Yasuro ;
Kuramoto, Hirornitsu ;
Miura, Yoshiaki ;
Shimaokat, Hideyuki ;
Kurogochi, Masaki ;
Nakano, Mika ;
Nishimura, Shin-Ichiro .
ANALYTICAL CHEMISTRY, 2008, 80 (04) :1094-1101
[25]   A Versatile Method for Analysis of Serine/Threonine Posttranslational Modifications by β-Elimination in the Presence of Pyrazolone Analogues [J].
Furukawa, Jun-ichi ;
Fujitani, Naoki ;
Araki, Kayo ;
Takegawa, Yasuhiro ;
Kodama, Kota ;
Shinohara, Yasuro .
ANALYTICAL CHEMISTRY, 2011, 83 (23) :9060-9067
[26]   Novel functions of complex carbohydrates elucidated by the mutant mice of glycosyltransferase genes [J].
Furukawa, K ;
Takamiya, K ;
Okada, M ;
Inoue, M ;
Fukumuto, S ;
Furukawa, K .
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2001, 1525 (1-2) :1-12
[27]   From lectin structure to functional glycomics: principles of the sugar code [J].
Gabius, Hans-Joachim ;
Andre, Sabine ;
Jimenez-Barbero, Jesus ;
Romero, Antonio ;
Solis, Dolores .
TRENDS IN BIOCHEMICAL SCIENCES, 2011, 36 (06) :298-313
[28]   Location, location, location: new insights into O-GaINAc protein glycosylation [J].
Gill, David J. ;
Clausen, Henrik ;
Bard, Frederic .
TRENDS IN CELL BIOLOGY, 2011, 21 (03) :149-158
[29]   Rapid Purification and High Sensitivity Analysis of Heparan Sulfate from Cells and Tissues TOWARD GLYCOMICS PROFILING [J].
Guimond, Scott E. ;
Puvirajesinghe, Tania M. ;
Skidmore, Mark A. ;
Kalus, Ina ;
Dierks, Thomas ;
Yates, Edwin A. ;
Turnbull, Jeremy E. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 284 (38) :25714-25722
[30]   Ceramide Glycosylation by Glucosylceramide Synthase Selectively Maintains the Properties of Breast Cancer Stem Cells [J].
Gupta, Vineet ;
Bhinge, Kaustubh N. ;
Hosain, Salman B. ;
Xiong, Katherine ;
Gu, Xin ;
Shi, Runhua ;
Ho, Ming-Yi ;
Khoo, Kay-Hooi ;
Li, Su-Chen ;
Li, Yu-Teh ;
Ambudkar, Suresh V. ;
Jazwinski, S. Michal ;
Liu, Yong-Yu .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (44) :37195-37205