Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype

被引:5
作者
Katz, Lee S. [1 ]
Turnsek, Maryann [1 ]
Kahler, Amy [1 ]
Hill, Vincent R. [1 ]
Boyd, E. Fidelma [2 ]
Tarr, Cheryl L. [1 ]
机构
[1] Ctr Dis Control & Prevent, Div Foodborne Waterborne & Environm Dis, Atlanta, GA 30333 USA
[2] Univ Delaware, Dept Biol Sci, Newark, DE USA
关键词
D O I
10.1128/genomeA.00617-14
中图分类号
学科分类号
摘要
Vibrio cholerae 2012EL-1759 is an environmental isolate from Haiti that was recovered in 2012 during a cholera outbreak. The genomic backbone is similar to that of the prototypical V. cholerae O1 classical biotype strain O395, and it carries the Vibrio pathogenicity islands (VPI-1 and VPI-2) and a cholera toxin (CTX) prephage.
引用
收藏
页数:2
相关论文
共 12 条
[1]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[2]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[3]   Molecular analyses of a putative CTXφ precursor and evidence for independent acquisition of distinct CTXφs by toxigenic Vibrio cholerae [J].
Boyd, EF ;
Heilpern, AJ ;
Waldor, MK .
JOURNAL OF BACTERIOLOGY, 2000, 182 (19) :5530-5538
[4]   progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement [J].
Darling, Aaron E. ;
Mau, Bob ;
Perna, Nicole T. .
PLOS ONE, 2010, 5 (06)
[5]   SOPRA: Scaffolding algorithm for paired reads via statistical optimization [J].
Dayarian, Adel ;
Michael, Todd P. ;
Sengupta, Anirvan M. .
BMC BIOINFORMATICS, 2010, 11
[6]   Nepalese origin of cholera epidemic in Haiti [J].
Frerichs, R. R. ;
Keim, P. S. ;
Barrais, R. ;
Piarroux, R. .
CLINICAL MICROBIOLOGY AND INFECTION, 2012, 18 (06) :E158-E163
[7]  
Hendriksen RS, 2011, MBIO, V2, DOI [10.1128/mBio.00157-11, 10.1128/mBio.00305-11]
[8]   Toxigenic Vibrio cholerae O1 in Water and Seafood, Haiti [J].
Hill, Vincent R. ;
Cohen, Nicole ;
Kahler, Amy M. ;
Jones, Jessica L. ;
Bopp, Cheryl A. ;
Marano, Nina ;
Tarr, Cheryl L. ;
Garrett, Nancy M. ;
Boncy, Jacques ;
Henry, Ariel ;
Gomez, Gerardo A. ;
Wellman, Michael ;
Curtis, Maurice ;
Freeman, Molly M. ;
Turnsek, Maryann ;
Benner, Ronald A., Jr. ;
Dahourou, Georges ;
Espey, David ;
DePaola, Angelo ;
Tappero, Jordan W. ;
Handzel, Tom ;
Tauxe, Robert V. .
EMERGING INFECTIOUS DISEASES, 2011, 17 (11) :2147-2150
[9]   A Vibrio cholerae pathogenicity island associated with epidemic and pandemic strains [J].
Karaolis, DKR ;
Johnson, JA ;
Bailey, CC ;
Boedeker, EC ;
Kaper, JB ;
Reeves, PR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (06) :3134-3139
[10]   Evolutionary Dynamics of Vibrio cholerae O1 following a Single-Source Introduction to Haiti [J].
Katz, Lee S. ;
Petkau, Aaron ;
Beaulaurier, John ;
Tyler, Shaun ;
Antonova, Elena S. ;
Turnsek, Maryann A. ;
Guo, Yan ;
Wang, Susana ;
Paxinos, Ellen E. ;
Orata, Fabini ;
Gladney, Lori M. ;
Stroika, Steven ;
Folster, Jason P. ;
Rowe, Lori ;
Freeman, Molly M. ;
Knox, Natalie ;
Frace, Mike ;
Boncy, Jacques ;
Graham, Morag ;
Hammer, Brian K. ;
Boucher, Yan ;
Bashir, Ali ;
Hanage, William P. ;
Van Domselaar, Gary ;
Tarr, Cheryl L. .
MBIO, 2013, 4 (04)