High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater

被引:2
作者
Ramsay, Bradley D. [1 ]
Hwang, Chiachi [1 ]
Woo, Hannah L. [2 ]
Carroll, Sue L. [3 ]
Lucas, Susan [4 ]
Han, James [4 ]
Lapidus, Alla L. [4 ]
Cheng, Jan-Fang [4 ]
Goodwin, Lynne A. [4 ]
Pitluck, Samuel [4 ]
Peters, Lin [4 ]
Chertkov, Olga [4 ]
Held, Brittany [4 ]
Detter, John C. [4 ]
Han, Cliff S. [4 ]
Tapia, Roxanne [4 ]
Land, Miriam L. [4 ]
Hauser, Loren J. [4 ]
Kyrpides, Nikos C. [4 ]
Ivanova, Natalia N. [4 ]
Mikhailova, Natalia [4 ]
Pagani, Ioanna [4 ]
Woyke, Tanja [4 ]
Arkin, Adam P. [5 ,6 ]
Dehal, Paramvir [5 ,6 ]
Chivian, Dylan [5 ,6 ]
Criddle, Craig S. [7 ]
Wu, Weimin [7 ]
Chakraborty, Romy [6 ,8 ]
Hazen, Terry C. [2 ,6 ,9 ,10 ]
Fields, Matthew W. [1 ,6 ,11 ]
机构
[1] Montana State Univ, Ctr Biofilm Engn, Bozeman, MT 59717 USA
[2] Univ Tennessee, Dept Civil & Environm Engn, Knoxville, TN 37996 USA
[3] Oak Ridge Natl Lab, Div Environm Sci, Oak Ridge, TN 37831 USA
[4] Dept Energy Joint Genome Inst, Walnut Creek, CA USA
[5] Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA USA
[6] Lawrence Berkeley Natl Lab, ENIGMA, Berkeley, CA USA
[7] Stanford Univ, Dept Civil & Environm Engn, Stanford, CA 94305 USA
[8] Lawrence Berkeley Natl Lab, Div Earth Sci, Berkeley, CA USA
[9] Univ Tennessee, Dept Microbiol, Knoxville, TN 37996 USA
[10] Univ Tennessee, Dept Earth & Planetary Sci, Knoxville, TN USA
[11] Montana State Univ, Dept Microbiol & Immunol, Bozeman, MT 59717 USA
关键词
D O I
10.1128/genomeA.00092-15
中图分类号
学科分类号
摘要
Desulfovibrio carbinoliphilus subsp. oakridgensis FW-101-2B is an anaerobic, organic acid/alcohol-oxidizing, sulfate-reducing beta-proteobacterium. FW-101-2B was isolated from contaminated groundwater at The Field Research Center at Oak Ridge National Lab after in situ stimulation for heavy metal-reducing conditions. The genome will help elucidate the metabolic potential of sulfate-reducing bacteria during uranium reduction.
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共 8 条
[1]   Temporal transcriptomic analysis as Desulfovibrio vulgaris hildenborough transitions into stationary phase during electron donor depletion [J].
Clark, M. E. ;
He, Q. ;
He, Z. ;
Huang, K. H. ;
Alm, E. J. ;
Wan, X. -F. ;
Hazen, T. C. ;
Arkin, A. P. ;
Wall, J. D. ;
Zhou, J. -Z. ;
Fields, M. W. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (08) :5578-5588
[2]   Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths [J].
Hwang, Chiachi ;
Wu, Weimin ;
Gentry, Terry J. ;
Carley, Jack ;
Corbin, Gail A. ;
Carroll, Sue L. ;
Watson, David B. ;
Jardine, Phil M. ;
Zhou, Jizhong ;
Criddle, Craig S. ;
Fields, Matthew W. .
ISME JOURNAL, 2009, 3 (01) :47-64
[3]   Prodigal: prokaryotic gene recognition and translation initiation site identification [J].
Hyatt, Doug ;
Chen, Gwo-Liang ;
LoCascio, Philip F. ;
Land, Miriam L. ;
Larimer, Frank W. ;
Hauser, Loren J. .
BMC BIOINFORMATICS, 2010, 11
[4]  
[吴唯民 Wu Weimin], 2011, [环境科学学报, Acta Scientiae Circumstantiae], V31, P449
[5]   IMG ER: a system for microbial genome annotation expert review and curation [J].
Markowitz, Victor M. ;
Mavromatis, Konstantinos ;
Ivanova, Natalia N. ;
Chen, I-Min A. ;
Chu, Ken ;
Kyrpides, Nikos C. .
BIOINFORMATICS, 2009, 25 (17) :2271-2278
[6]   Shifting the genomic gold standard for the prokaryotic species definition [J].
Richter, Michael ;
Rossello-Mora, Ramon .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (45) :19126-19131
[7]   In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen [J].
Wu, Wei-Min ;
Carley, Jack ;
Luo, Jian ;
Ginder-Vogel, Matthew A. ;
Cardenas, Erick ;
Leigh, Mary Beth ;
Hwang, Chiachi ;
Kelly, Shelly D. ;
Ruan, Chuanmin ;
Wu, Liyou ;
Van Nostrand, Joy ;
Gentry, Terry ;
Lowe, Kenneth ;
Mehlhorn, Tonia ;
Carroll, Sue ;
Luo, Wensui ;
Fields, Matthew W. ;
Gu, Baohua ;
Watson, David ;
Kemner, Kenneth M. ;
Marsh, Terence ;
Tiedje, James ;
Zhou, Jizhong ;
Fendorf, Scott ;
Kitanidis, Peter K. ;
Jardine, Philip M. ;
Criddle, Craig S. .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2007, 41 (16) :5716-5723
[8]   Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [J].
Zerbino, Daniel R. ;
Birney, Ewan .
GENOME RESEARCH, 2008, 18 (05) :821-829